>SSM477 (SSM477Q) /CSM/SS/SSM4-D/SSM477Q.Seq.d/
CTTGTCCAATACCAACCCCATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATG
AAGATGATGCTCTACAATGTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACA
TTCAATCAAATAAAACCATTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTG
CTTTTGAAAAAGATCCAACCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTT
TATCTTTTATCAAGAGTAAAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTA
CATCTTCAAGAGTAACTAAAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATT
AAAACATTAATTAAAAAAATAAAAAAATAAAAAATAAAAAATAAATAATAAAGAAATAAT
AAAAATTTAAATAAAATCA

CPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQSNKTIEEIENELDDFCKIA
FEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTSSRVTKAILSHHVLINKNY*
nin*knkkiknkk*iikk**kfk*n

Frame A:
lvqyqphlhrhpnklnqkemkmmlynvqfvnwlpln*kstfnqikplkrlkmnwmisvkl
llkkiqpnakvlynnmfq*fyllsrvkriqlklaln*nsvhlqe*lkqflvimf*lirii
ktlikkikk*kiknk**rnnknlnki


Frame B:
lsntnpisiaiqts*tkkk*r*cstmynl*igch*irrvhsik*nh*rd*k*ig*fl*nc
f*krsnpmprfctticsndfifyqe*rgsnsslh*ikilyifksn*sns*sscfd**ell
kh*lkk*knkk*kinnkeiiki*iks


Frame C:
CPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQSNKTIEEIENELDDFCKIA
FEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTSSRVTKAILSHHVLINKNY*
nin*knkkiknkk*iikk**kfk*n

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM477 (SSM477Q) /CSM/SS/SSM4-D/SSM477Q.Seq.d/                        735   0.0
SSJ869 (SSJ869Q) /CSM/SS/SSJ8-C/SSJ869Q.Seq.d/                        735   0.0
SSH403 (SSH403Q) /CSM/SS/SSH4-A/SSH403Q.Seq.d/                        735   0.0
SSH302 (SSH302Q) /CSM/SS/SSH3-A/SSH302Q.Seq.d/                        735   0.0
SSG441 (SSG441Q) /CSM/SS/SSG4-B/SSG441Q.Seq.d/                        735   0.0
SSC244 (SSC244Q) /CSM/SS/SSC2-B/SSC244Q.Seq.d/                        728   0.0
SSB889 (SSB889Q) /CSM/SS/SSB8-D/SSB889Q.Seq.d/                        646   0.0
SSE704 (SSE704Q) /CSM/SS/SSE7-A/SSE704Q.Seq.d/                         80   3e-14
SSK260 (SSK260Q) /CSM/SS/SSK2-C/SSK260Q.Seq.d/                         38   0.11
VSD193 (VSD193Q) /CSM/VS/VSD1-D/VSD193Q.Seq.d/                         36   0.43

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC139722|AC139722.1 Homo sapiens BAC clone RP11-100N20 from 4, complete sequence.    50  0.011  4
AC015949|AC015949.3 Homo sapiens chromosome 4 clone RP11-110P12 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    50  0.081  4
AL033503|AL033503.1 C.albicans cosmid Ca49C4.                     44  1.4  1
AC121743|AC121743.3 Rattus norvegicus clone CH230-99O14, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44  1.4  1
AC111858|AC111858.4 Rattus norvegicus clone CH230-203J17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.4  1
AF015306|AF015306.1 Candida albicans small GTP-binding protein SEC4p (SEC4) gene, complete cds.    44  1.4  1
AC138678|AC138678.5 Mus musculus chromosome 7 clone RP23-18B20 map 7, WORKING DRAFT SEQUENCE, 19 unordered pieces.    44  1.4  1
AC092514|AC092514.2 Papio cynocephalus anubis clone RP41-56L12, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  1.4  1
AF335589|AF335589.1 Glycine max chitinase class I (Chia1) and hypothetical protein genes, complete cds.    40  1.7  3
U02245|U02245.1 Mycoplasma genitalium random genomic clone xfb3, partial cds.    40  2.3  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...    64   2e-09
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like...    58   9e-08
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    58   9e-08
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    58   9e-08
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m...    56   3e-07
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ...    54   1e-06
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ...    53   3e-06
(P10960) RecName: Full=Sulfated glycoprotein 1;          Short=S...    52   5e-06
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei...    52   5e-06
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA...    52   5e-06

 psg: 0.82  gvh: 0.28  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.04
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial

>> prediction for SSM477 is nuc

>SSM477E.Seq
CTTGTCCAATACCAACCCCATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATG
AAGATGATGCTCTACAATGTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACA
TTCAATCAAATAAAACCATTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTG
CTTTTGAAAAAGATCCAACCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTT
TATCTTTTATCAAGAGTAAAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTA
CATCTTCAAGAGTAACTAAAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATT
AAAACATTAATTAAAAAAATAAAAAAATAAAAAATAAAAAATAAATAATAAAGAAATAAT
AAAAATTTAAATAAAATCA