>SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/
XXXXXXXXXXCATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTT
AACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCT
GTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAG
CCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAA
GGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAAT
GAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAAT
AATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTA
ATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCC
TAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATG
TTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAAAAA

---CLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEP
KCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANN
YWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemf
fy*knknknnnf*lyk

Frame A:
---mfiq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*a
kmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*
lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nv
fllkk*k*k**fliv*k


Frame B:
---CLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEP
KCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANN
YWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemf
fy*knknknnnf*lyk


Frame C:
---vysinlilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsq
nvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqii
igslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcf
sikkikikiiisncik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                       1070   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                       1070   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1070   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                       1070   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1070   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1070   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1070   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                       1070   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1070   0.0
SSG528 (SSG528Q) /CSM/SS/SSG5-B/SSG528Q.Seq.d/                       1070   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.  1070  0.0  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   809  0.0  4
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   515  e-157  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  3e-37  5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76  3e-29  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  4e-29  5
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  9e-12  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56  2e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  3e-07  3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  2e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   306   4e-82
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   158   1e-37
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   158   1e-37
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   145   8e-34
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   145   1e-33
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   143   4e-33
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   141   2e-32
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   140   2e-32
BT082794_1(BT082794|pid:none) Anoplopoma fimbria clone afim-evh-...   140   2e-32
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   140   2e-32

 psg: 0.77  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSM471 is cyt

>SSM471Z.Seq
----------CATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTT
AACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCT
GTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAG
CCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAA
GGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAAT
GAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAAT
AATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTA
ATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCC
TAGATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATG
TTTTTCTATTAAAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAAAAA