>SSM447 (SSM447Q) /CSM/SS/SSM4-B/SSM447Q.Seq.d/
XXXXXXXXXXTTATATGAAGATTGGAAAACTGTTAATCAAACAATGAATTATTTAAGAAA
AATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTCAAGT
TTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAACAAC
AACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTTCATC
AACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTGGATC
AAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAACTTG
GTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAATCCATCAAGTAG
TCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAATTGAA
TTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTGGTCA
AACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCAAAATTT
AAAAAAAAA

---YEDWKTVNQTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTT
TGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWF
DGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQT
LSFGYIVSSSTVITFTQNLKK

Frame A:
---ymkigkllikq*ii*eklilhlqnslqmvikfvlvkfqqfqqlvvqlqllhnqqqqq
qleqvqqlvnqqplvdqvhqqlqlnhqqqqqqqqqplvdqvqldhqmlkqllnklldklg
lmvqiqilwlivh*pihqvvqflfqdlqliklhhhlgn*i*lvqilfhlqvgitklvlvk
lyhlvilflvvl*lhllki*kk


Frame B:
---i*rlenc*snnelfkkn*fftfkihskw*snlswssfnnfnnw*fnyncftinnnnn
nwnrfnn**tnnhwwirfinnyn*tinnnnnnnnnhwwikynwiikc*ssy*tny*tnlv
*wykykyfg*lyinqsik*snsyskicn**nsiiilgiefs*fkycfiykle*pn*swsn
fiiwlycf**ycnyiyskfkkk


Frame C:
---YEDWKTVNQTMNYLRKINSSPSKFTPNGNQICLGQVSTISTIGSSTTTASQSTTTTT
TGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGGSSTTGSSNVKAVIKQTIRQTWF
DGTNTNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWELNLVSSNIVSFTSWNNQISPGQT
LSFGYIVSSSTVITFTQNLKK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM447 (SSM447Q) /CSM/SS/SSM4-B/SSM447Q.Seq.d/                        618   e-176
SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/                        611   e-174
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/                        611   e-174
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/                        611   e-174
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/                        611   e-174
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/                        611   e-174
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/                        611   e-174
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/                        611   e-174
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/                        611   e-174
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/                        611   e-174

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M18162|M18162.1 Pea PSL3 lectin pseudogene.                       44  0.033  2
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.50  1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.    46  0.50  1
AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.    46  0.50  1
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.96  3
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11.    40  1.3  2
AC087369|AC087369.5 Homo sapiens chromosome 8, clone RP11-728L1, complete sequence.    32  3.0  5
AF196362|AF196362.1 Uroleucon ambrosiae isolate IL2.17 cytochrome oxidase I subunit-like gene, partial sequence; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.0  2
AF196366|AF196366.1 Uroleucon ambrosiae isolate LA.013 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.0  2
AF196356|AF196356.1 Uroleucon ambrosiae isolate AZ.065 cytochrome oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II gene, partial cds; mitochondrial genes for mitochondrial products.    36  3.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    50   5e-05
(P14768) RecName: Full=Endo-1,4-beta-xylanase A;          Short=...    43   0.006
(P22698) RecName: Full=Spore germination protein 270-11;  &B3562...    41   0.030
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    38   0.19
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ...    38   0.19
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin...    38   0.25
CP000934_3210(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.43
CP000934_1425(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.43
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    37   0.56
AF054615_1(AF054615|pid:none) Fragaria x ananassa cellulase (Cel...    36   0.73

 psg: 0.75  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSM447 is cyt

>SSM447Z.Seq
----------TTATATGAAGATTGGAAAACTGTTAATCAAACAATGAATTATTTAAGAAA
AATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTCAAGT
TTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAACAAC
AACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTTCATC
AACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTGGATC
AAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAACTTG
GTTTGATGGTACAAATACAAATACTTTGGTTGATTGTACATTAACCAATCCATCAAGTAG
TCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAATTGAA
TTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTGGTCA
AACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATTACATTTACTCAAAATTT
AAAAAAAAA