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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM443
Library SS
(Link to library)
Clone ID SSM443
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01374-1|Contig-U15669-1
Original site URL
Representative seq. ID SSM443P
(Link to Original site)
Representative DNA sequence 
>SSM443 (SSM443Q) /CSM/SS/SSM4-B/SSM443Q.Seq.d/
AAACTGTTCAAGATAGAAAATATATTTATGATAATCCATTACCAACTGGTATTAGTCCGT
ATTCGGAATTATTCTCTGAGAATAAACTTCATACACNAAAGAAACAATCAACTACCTCTT
CACACCAAAACCAACCTTGGAAACCATCTTTAAAANCAACTACTTCAATACAAGATAATT
GTCATAAAATAACTAAAAATACAACTTTTCGACCAATTTCACCACCACCTCCAAAACCAA
ATTTTTATAXXXXXXXXXXAGTTCTTATTGAAAAGTTATCAATAAATTCTTCAACAACTG
CAACAACTGCAATAGCAACAACTGCAACGGCAACAACAACAACAACAACAACTTCACATC
ATCATCAACATACAATTGAACAACCACAACTACAACAACATTTTCATCAACAAATAAAAT
CAACAGCAACAACAACAACAACAACAACAACAGCTACAACAACATCAAGTGCATCAACAA
CATCAACAGCGCCAACAAATTTAATAACAAGACCAGTAAAAAAATCTCTTTCCTCAACTA
ATTTATTTAATAATCAAAACTACTCACCAAGTGGAAGTAGTAGTAGTCATAGTAGTAGAA
CTACTTCACCAATTAATACAAATATAACTTCACACTCTTCAACTAATAATAATGTTAATA
ATAATAATAATAATAATAATAGTAATAATAATAACAGTAATAATGGTGACAAATCTGAAA
AAACAACACCTTTGTCGGTGGTTGTTTCTCAATAAAAAAAGA
sequence update 1999. 1.17
Translated Amino Acid sequence 
TVQDRKYIYDNPLPTGISPYSELFSENKLHTXKKQSTTSSHQNQPWKPSLKXTTSIQDNC
HKITKNTTFRPISPPPPKPNFY---

---VLIEKLSINSSTTATTAIATTATATTTTTTTSHHHQHTIEQPQLQQHFHQQIKSTAT
TTTTTTTATTTSSASTTSTAPTNLITRPVKKSLSSTNLFNNQNYSPSGSSSSHSSRTTSP
INTNITSHSSTNNNVNNNNNNNNSNNNNSNNGDKSEKTTPLSVVVSQ*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
klfkienifmiihyqlvlvrirnyslrinfihxrnnqlplhtktnlgnhl*xqllqykii
vik*lkiqlfdqfhhhlqnqifi---

---ssy*kvinkffnncnncnsnncngnnnnnnnftssstyn*tttttttfsstnkinsn
nnnnnnnsynnikcinninsankfnnktskkisfln*fi**sklltkwk***s***nyft
n*ykynftlfn***c*************q**w*qi*knntfvggcfsikk

Frame B:
ncsr*kiyl**sitnwy*svfgiil*e*tsytketinylftpkptletifkxnyfntr*l
s*nn*kynfstnftttsktkfl---

---VLIEKLSINSSTTATTAIATTATATTTTTTTSHHHQHTIEQPQLQQHFHQQIKSTAT
TTTTTTTATTTSSASTTSTAPTNLITRPVKKSLSSTNLFNNQNYSPSGSSSSHSSRTTSP
INTNITSHSSTNNNVNNNNNNNNSNNNNSNNGDKSEKTTPLSVVVSQ*kk

Frame C:
TVQDRKYIYDNPLPTGISPYSELFSENKLHTXKKQSTTSSHQNQPWKPSLKXTTSIQDNC
HKITKNTTFRPISPPPPKPNFY---

---fllksyq*ilqqlqqlq*qqlqrqqqqqqqlhiiiniqlnnhnynnifink*nqqqq
qqqqqqqlqqhqvhqqhqqrqqi**qdq*knlfpqliyliiktthqvevvvvivvellhq
liqi*lhtlqliimliiiiiiiiviiitvimvtnlkkqhlcrwlflnkkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM443 (SSM443Q) /CSM/SS/SSM4-B/SSM443Q.Seq.d/                        505   e-142
SLH749 (SLH749Q) /CSM/SL/SLH7-C/SLH749Q.Seq.d/                        466   e-130
SLH813 (SLH813Q) /CSM/SL/SLH8-A/SLH813Q.Seq.d/                        313   2e-84
SSG781 (SSG781Q) /CSM/SS/SSG7-D/SSG781Q.Seq.d/                        285   5e-76
SSB268 (SSB268Q) /CSM/SS/SSB2-C/SSB268Q.Seq.d/                         98   2e-19
SSJ858 (SSJ858Q) /CSM/SS/SSJ8-C/SSJ858Q.Seq.d/                         42   0.012
SSF303 (SSF303Q) /CSM/SS/SSF3-A/SSF303Q.Seq.d/                         42   0.012
CHD353 (CHD353Q) /CSM/CH/CHD3-C/CHD353Q.Seq.d/                         42   0.012
CHC370 (CHC370Q) /CSM/CH/CHC3-C/CHC370Q.Seq.d/                         42   0.012
AFL651 (AFL651Q) /CSM/AF/AFL6-C/AFL651Q.Seq.d/                         42   0.012
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34  0.14  6
BZ777278|BZ777278.1 ii09a09.b1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ii09a09, DNA sequence.    48  0.16  1
U55259|U55259.1 Helobdella triserialis cyclin B3 mRNA, complete cds.    48  0.16  1
AC024716|AC024716.4 Homo sapiens chromosome X clone RP11-203F15, WORKING DRAFT SEQUENCE, 31 unordered pieces.    46  0.21  4
AX344551|AX344551.1 Sequence 2 from Patent WO0200932.             38  0.25  8
AX348983|AX348983.1 Sequence 441 from Patent WO0202807.           38  0.33  2
AX348408|AX348408.1 Sequence 103 from Patent WO0202806.           38  0.33  2
X13975|X13975.1 Locust mitochondrial DNA for COII, COIII, ATPase 6, ATPase 8 and tRNA-Leu(UUR), tRNA-Asp, tRNA-Lys, tRNA-Gly genes.    36  0.62  2
AC136792|AC136792.1 Rattus norvegicus clone CH230-405G3, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    46  0.64  1
AC106984|AC106984.4 Rattus norvegicus clone CH230-233I23, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46  0.64  2
dna update 2003. 8.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 585,251,789
protein update 2009. 6.15
PSORT 

 psg: 0.84  gvh: 0.33  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSM443 is nuc
5' end seq. ID SSM443F
5' end seq. 
>SSM443F.Seq
AAACTGTTCAAGATAGAAAATATATTTATGATAATCCATTACCAACTGGTATTAGTCCGT
ATTCGGAATTATTCTCTGAGAATAAACTTCATACACNAAAGAAACAATCAACTACCTCTT
CACACCAAAACCAACCTTGGAAACCATCTTTAAAANCAACTACTTCAATACAAGATAATT
GTCATAAAATAACTAAAAATACAACTTTTCGACCAATTTCACCACCACCTCCAAAACCAA
ATTTTTATA----------
Length of 5' end seq. 249
3' end seq. ID SSM443Z
3' end seq. 
>SSM443Z.Seq
----------AGTTCTTATTGAAAAGTTATCAATAAATTCTTCAACAACTGCAACAACTG
CAATAGCAACAACTGCAACGGCAACAACAACAACAACAACAACTTCACATCATCATCAAC
ATACAATTGAACAACCACAACTACAACAACATTTTCATCAACAAATAAAATCAACAGCAA
CAACAACAACAACAACAACAACAGCTACAACAACATCAAGTGCATCAACAACATCAACAG
CGCCAACAAATTTAATAACAAGACCAGTAAAAAAATCTCTTTCCTCAACTAATTTATTTA
ATAATCAAAACTACTCACCAAGTGGAAGTAGTAGTAGTCATAGTAGTAGAACTACTTCAC
CAATTAATACAAATATAACTTCACACTCTTCAACTAATAATAATGTTAATAATAATAATA
ATAATAATAATAGTAATAATAATAACAGTAATAATGGTGACAAATCTGAAAAAACAACAC
CTTTGTCGGTGGTTGTTTCTCAATAAAAAAAGA
Length of 3' end seq. 503
Connected seq. ID SSM443P
Connected seq. 
>SSM443P.Seq
AAACTGTTCAAGATAGAAAATATATTTATGATAATCCATTACCAACTGGTATTAGTCCGT
ATTCGGAATTATTCTCTGAGAATAAACTTCATACACNAAAGAAACAATCAACTACCTCTT
CACACCAAAACCAACCTTGGAAACCATCTTTAAAANCAACTACTTCAATACAAGATAATT
GTCATAAAATAACTAAAAATACAACTTTTCGACCAATTTCACCACCACCTCCAAAACCAA
ATTTTTATA----------AGTTCTTATTGAAAAGTTATCAATAAATTCTTCAACAACTG
CAACAACTGCAATAGCAACAACTGCAACGGCAACAACAACAACAACAACAACTTCACATC
ATCATCAACATACAATTGAACAACCACAACTACAACAACATTTTCATCAACAAATAAAAT
CAACAGCAACAACAACAACAACAACAACAACAGCTACAACAACATCAAGTGCATCAACAA
CATCAACAGCGCCAACAAATTTAATAACAAGACCAGTAAAAAAATCTCTTTCCTCAACTA
ATTTATTTAATAATCAAAACTACTCACCAAGTGGAAGTAGTAGTAGTCATAGTAGTAGAA
CTACTTCACCAATTAATACAAATATAACTTCACACTCTTCAACTAATAATAATGTTAATA
ATAATAATAATAATAATAATAGTAATAATAATAACAGTAATAATGGTGACAAATCTGAAA
AAACAACACCTTTGTCGGTGGTTGTTTCTCAATAAAAAAAGA
Length of connected seq. 752
Full length Seq ID -
Full length Seq. -
Length of full length seq. -