>SSM365 (SSM365Q) /CSM/SS/SSM3-C/SSM365Q.Seq.d/
XXXXXXXXXXAAGTGGTGATTTTGGTGTTGGTTGTAATGATGATTGTGATTCATTTTCAC
CAGGTTGGCCAGCATCTTCCCGTTTTGTATTGGCAGTTGGGGGGGTAATTAAAAAGAAGG
ATGGCAGTATCATTGGTGATGAAATATCTGGTGGTGGTTTTAGTAACTATTTCTCCCGTC
CATGGTATCAAGTGGATGAATGTTCTTCCTATATCGAGTGGTTAAACGGTTCTCTCTCTA
GTTTCTACAATCAATCTGGAAGAGGTTTCCCTGATATCTCATCTTTCTCAGAAAATGTCG
TTATACTCTACAAAGACAAATTGATGCCAATTGGAGGTACTTCTGCATCAGCTCCAATTA
TTGCCGGCTTATTATCATTAATTAACGACCAAAGATTACAAAAAAATCAAAGTCCAATTG
GTCTTTTCAATCCATTACTTTATAAAATTGCAAGAGATCATCCAAACTCTTTCCTTGATA
TTGACTTTGGTGAAAATAATTATAAATGTTGTACCAATGGTTTTAAATCTAAAAGTGGTT
GGGATCCAGTAACTGGTTTAGGTTTACCAAATTTTGATGAATTGGTTAAATATTGTCTTG
AAAAAAAAAAAAAAAA

---SGDFGVGCNDDCDSFSPGWPASSRFVLAVGGVIKKKDGSIIGDEISGGGFSNYFSRP
WYQVDECSSYIEWLNGSLSSFYNQSGRGFPDISSFSENVVILYKDKLMPIGGTSASAPII
AGLLSLINDQRLQKNQSPIGLFNPLLYKIARDHPNSFLDIDFGENNYKCCTNGFKSKSGW
DPVTGLGLPNFDELVKYCLEKKKK

Frame A:
---SGDFGVGCNDDCDSFSPGWPASSRFVLAVGGVIKKKDGSIIGDEISGGGFSNYFSRP
WYQVDECSSYIEWLNGSLSSFYNQSGRGFPDISSFSENVVILYKDKLMPIGGTSASAPII
AGLLSLINDQRLQKNQSPIGLFNPLLYKIARDHPNSFLDIDFGENNYKCCTNGFKSKSGW
DPVTGLGLPNFDELVKYCLEKKKK


Frame B:
---vvilvlvvmmivihfhqvgqhlpvlywqlgg*lkrrmavslvmkylvvvlvtispvh
gikwmnvlpissg*tvlslvstinleevslishlsqkmslystktn*cqlevllhqlqll
payyh*lttkdykkikvqlvfsihyfiklqeiiqtlsliltlvkiiinvvpmvlnlkvvg
iq*lv*vyqilmnwlnivlkkkkk


Frame C:
---w*fwcwl***l*fiftrlasifpfcigswggn*kegwqyhw**niwwwf**lflpsm
vssg*mfflyrvvkrfsl*flqsiwkrfp*yliflrkcrytlqrqidanwryfcissnyc
rliiin*rpkitkksksnwsfqsitl*nckrssklfp*y*lw*k*l*mlyqwf*i*kwlg
ssnwfrftkf**ig*ils*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM365 (SSM365Q) /CSM/SS/SSM3-C/SSM365Q.Seq.d/                       1086   0.0
SFH720 (SFH720Q) /CSM/SF/SFH7-A/SFH720Q.Seq.d/                       1019   0.0
CFC388 (CFC388Q) /CSM/CF/CFC3-D/CFC388Q.Seq.d/                       1019   0.0
CFC152 (CFC152Q) /CSM/CF/CFC1-C/CFC152Q.Seq.d/                       1019   0.0
AFE286 (AFE286Q) /CSM/AF/AFE2-D/AFE286Q.Seq.d/                       1019   0.0
AFA556 (AFA556Q) /CSM/AF/AFA5-C/AFA556Q.Seq.d/                       1013   0.0
SSG246 (SSG246Q) /CSM/SS/SSG2-B/SSG246Q.Seq.d/                       1007   0.0
SSD460 (SSD460Q) /CSM/SS/SSD4-C/SSD460Q.Seq.d/                        940   0.0
SFL146 (SFL146Q) /CSM/SF/SFL1-B/SFL146Q.Seq.d/                        928   0.0
SFL356 (SFL356Q) /CSM/SF/SFL3-C/SFL356Q.Seq.d/                        896   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC093729|AC093729.2 Homo sapiens BAC clone RP11-11N6 from 4, complete sequence.    50  0.033  1
AP001948|AP001948.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2243F22, WORKING DRAFT SEQUENCE, unordered pieces.    50  0.033  1
BX537292|BX537292.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-213E17.    38  1.1  3
BZ330174|BZ330174.1 hv90e08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hv90e08 5', DNA sequence.    36  1.2  2
BZ330175|BZ330175.1 hv90e08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hv90e08 5', DNA sequence.    36  1.3  2
BZ335743|BZ335743.1 hz26f02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hz26f02 5', DNA sequence.    36  1.4  2
BZ628823|BZ628823.1 ih62d12.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ih62d12 5', DNA sequence.    36  1.7  2
BZ340606|BZ340606.1 ic39h07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ic39h07 5', DNA sequence.    36  1.8  2
BZ422970|BZ422970.1 hz32f11.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone hz32f11 5', DNA sequence.    36  1.8  2
BZ340607|BZ340607.1 ic39h07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ic39h07 5', DNA sequence.    36  1.9  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...   384   e-106
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...   139   8e-32
BC068900_1(BC068900|pid:none) Xenopus laevis hypothetical protei...   130   3e-29
BC135587_1(BC135587|pid:none) Xenopus tropicalis hypothetical pr...   124   2e-27
AJ011912_1(AJ011912|pid:none) Mus musculus mRNA for putative tri...   117   2e-25
(O89023) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...   117   2e-25
AK083832_1(AK083832|pid:none) Mus musculus 12 days embryo spinal...   117   2e-25
AK169924_1(AK169924|pid:none) Mus musculus NOD-derived CD11c +ve...   117   2e-25
(Q9EQV6) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...   116   4e-25
AM920435_393(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   115   7e-25

 psg: 0.75  gvh: 0.43  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSM365 is nuc

>SSM365Z.Seq
----------AAGTGGTGATTTTGGTGTTGGTTGTAATGATGATTGTGATTCATTTTCAC
CAGGTTGGCCAGCATCTTCCCGTTTTGTATTGGCAGTTGGGGGGGTAATTAAAAAGAAGG
ATGGCAGTATCATTGGTGATGAAATATCTGGTGGTGGTTTTAGTAACTATTTCTCCCGTC
CATGGTATCAAGTGGATGAATGTTCTTCCTATATCGAGTGGTTAAACGGTTCTCTCTCTA
GTTTCTACAATCAATCTGGAAGAGGTTTCCCTGATATCTCATCTTTCTCAGAAAATGTCG
TTATACTCTACAAAGACAAATTGATGCCAATTGGAGGTACTTCTGCATCAGCTCCAATTA
TTGCCGGCTTATTATCATTAATTAACGACCAAAGATTACAAAAAAATCAAAGTCCAATTG
GTCTTTTCAATCCATTACTTTATAAAATTGCAAGAGATCATCCAAACTCTTTCCTTGATA
TTGACTTTGGTGAAAATAATTATAAATGTTGTACCAATGGTTTTAAATCTAAAAGTGGTT
GGGATCCAGTAACTGGTTTAGGTTTACCAAATTTTGATGAATTGGTTAAATATTGTCTTG
AAAAAAAAAAAAAAAA