SSM325
Library SS
(Link to library)
Clone ID SSM325
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03802-1
Original site URL
Representative seq. ID SSM325Z
(Link to Original site)
Representative DNA sequence
>SSM325 (SSM325Q) /CSM/SS/SSM3-B/SSM325Q.Seq.d/
XXXXXXXXXXATTTTGGTCACAATCAAATTCATATACTCTTCCAGATTTACCATATGATT
ATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGACTCTTCATCATAAGAAACATC
ATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATAAATTATCTTCTGCTTCTTCAG
CAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAATTAAATTCAATGGTGGTGGTC
ACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAAAAAATCAAGATGGTGGTGTTG
CACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAATATGGATCAATTGAAAAATTAA
TTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTTCTGGTTGGGGTTGGTTAGGTT
ATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAACAAAACCAAGATCCACTTTCAG
TTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGGAACATGCTTATTATCTTGATT
ATAAAAATGTTAGAGCAGACTATGTTAAAAACATTTGGCAAATTGTTAATTGGAAGAATG
TTGCTGAAAGATATAACACTGCCAAAAAATAAATCATTTGTTTAAAATAGAATCAAAAAA
ATA
sequence update 1998. 4.22
Translated Amino Acid sequence
---FWSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLNIALDKLSSASSA
KDVAQMIALQSAIKFNGGGHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLI
EKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDY
KNVRADYVKNIWQIVNWKNVAERYNTAKK*iiclk*nqkn


Translated Amino Acid sequence (All Frames)
Frame A:
---FWSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLNIALDKLSSASSA
KDVAQMIALQSAIKFNGGGHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLI
EKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDY
KNVRADYVKNIWQIVNWKNVAERYNTAKK*iiclk*nqkn


Frame B:
---fghnqihilfqiyhmimvlfhqssvqkl*lfiirniiklm*iilisl*inyllllqq
kmllk*llskvqlnsmvvvt*itlsfgli*hqkikmvvlhqvvhwlmllinnmdqlkn*l
kkcqlkllqfkvlvgvg*vmikpmivslfklnktkihfqflvmfly*vlmfgnmliilii
kmleqtmlktfgklligrmllkditlpknksfv*nrikki


Frame C:
---lvtikfiyssrfti*lwcsftshqsrnydsss*etssnlck*s*yrfr*iifcffsk
rccsndcspkcn*iqwwwsrkslylld*fstkksrwwcctkwsig*cy**tiwin*kin*
knvs*nycnsrfwlglvrl**sq*ssrysnstkprstfsfwlcsfiry*clgtclls*l*
kc*srlc*khlanc*leecc*ki*hcqkinhlfkieskk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM325 (SSM325Q) /CSM/SS/SSM3-B/SSM325Q.Seq.d/ 1277 0.0
SLA587 (SLA587Q) /CSM/SL/SLA5-D/SLA587Q.Seq.d/ 1255 0.0
SSA566 (SSA566Q) /CSM/SS/SSA5-C/SSA566Q.Seq.d/ 1215 0.0
VSE536 (VSE536Q) /CSM/VS/VSE5-B/VSE536Q.Seq.d/ 1197 0.0
VSH246 (VSH246Q) /CSM/VS/VSH2-B/VSH246Q.Seq.d/ 1152 0.0
VSF871 (VSF871Q) /CSM/VS/VSF8-C/VSF871Q.Seq.d/ 1088 0.0
SSE504 (SSE504Q) /CSM/SS/SSE5-A/SSE504Q.Seq.d/ 1074 0.0
VSE837 (VSE837Q) /CSM/VS/VSE8-B/VSE837Q.Seq.d/ 1011 0.0
SSC249 (SSC249Q) /CSM/SS/SSC2-C/SSC249Q.Seq.d/ 870 0.0
VSA601 (VSA601Q) /CSM/VS/VSA6-A/VSA601Q.Seq.d/ 799 0.0

own update 2003. 6.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB097760|CB097760.1 ku44g07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 98 2e-28 4
BI506560|BI506560.1 BB170021B20G02.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170021B20G02 5', mRNA sequence. 64 4e-25 4
AY329356|AY329356.1 Apis mellifera ligustica Mn superoxide dismutase (Sod2) mRNA, partial cds; nuclear gene for mitochondrial protein. 64 7e-25 4
AL440909|AL440909.1 T7 end of clone BD0AA015F01 of library BD0AA from strain CBS 94 of Candida tropicalis. 50 6e-15 4
AE006277|AE006277.1 Lactococcus lactis subsp. lactis IL1403 section 39 of 218 of the complete genome. 58 6e-13 3
BI773122|BI773122.1 kq45a09.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 60 4e-12 2
BI773242|BI773242.1 kx04b06.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:SODM_CAEEL P31161 SUPEROXIDE DISMUTASE [MN] 1, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 56 3e-11 3
U17388|U17388.1 Lactococcus lactis superoxide dismutase (sodA) gene, complete cds; and unknown genes. 58 2e-10 2
BM361618|BM361618.1 A00906-R Appressorium stage EST library of Blumeria graminis f.sp. hordei Blumeria graminis f. sp. hordei cDNA similar to Superoxide dismutase, mn , mitochondrial pr, mRNA sequence. 58 2e-10 2
BM361518|BM361518.1 A00811-R Appressorium stage EST library of Blumeria graminis f.sp. hordei Blumeria graminis f. sp. hordei cDNA similar to Superoxide dismutase, mn , mitochondrial pr, mRNA sequence. 58 2e-10 2
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX908798_270(BX908798|pid:none) Parachlamydia-related symbiont U... 300 2e-80
FJ941827_1(FJ941827|pid:none) Hemibarbus mylodon manganese super... 258 8e-68
BC075257_1(BC075257|pid:none) Xenopus tropicalis superoxide dism... 258 1e-67
BT083315_1(BT083315|pid:none) Anoplopoma fimbria clone afim-evh-... 257 2e-67
AY362041_1(AY362041|pid:none) Xenopus laevis manganese superoxid... 253 3e-66
BC073330_1(BC073330|pid:none) Xenopus laevis MGC80739 protein, m... 253 5e-66
BT082354_1(BT082354|pid:none) Anoplopoma fimbria clone afim-evh-... 252 6e-66
EF633506_1(EF633506|pid:none) Ginkgo biloba superoxide dismutase... 252 8e-66
AF242310_1(AF242310|pid:none) Euphorbia esula manganese superoxi... 251 1e-65
AY675508_1(AY675508|pid:none) Paragonimus westermani Mn-SOD mRNA... 251 2e-65
protein update 2009. 6.15
PSORT

psg: 0.73 gvh: 0.51 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSM325 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM325Z
3' end seq.
>SSM325Z.Seq
----------ATTTTGGTCACAATCAAATTCATATACTCTTCCAGATTTACCATATGATT
ATGGTGCTCTTTCACCAGTCATCAGTCCAGAAATTATGACTCTTCATCATAAGAAACATC
ATCAAACTTATGTAAATAATCTTAATATCGCTTTAGATAAATTATCTTCTGCTTCTTCAG
CAAAAGATGTTGCTCAAATGATTGCTCTCCAAAGTGCAATTAAATTCAATGGTGGTGGTC
ACGTAAATCACTCTATCTTTTGGACTAATTTAGCACCAAAAAATCAAGATGGTGGTGTTG
CACCAAGTGGTCCATTGGCTGATGCTATTAATAAACAATATGGATCAATTGAAAAATTAA
TTGAAAAAATGTCAGCTGAAACTACTGCAATTCAAGGTTCTGGTTGGGGTTGGTTAGGTT
ATGATAAAGCCAATGATCGTCTCGTTATTCAAACTCAACAAAACCAAGATCCACTTTCAG
TTTCTGGTTATGTTCCTTTATTAGGTATTGATGTTTGGGAACATGCTTATTATCTTGATT
ATAAAAATGTTAGAGCAGACTATGTTAAAAACATTTGGCAAATTGTTAATTGGAAGAATG
TTGCTGAAAGATATAACACTGCCAAAAAATAAATCATTTGTTTAAAATAGAATCAAAAAA
ATA
Length of 3' end seq. 653
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -