SSM309
Library SS
(Link to library)
Clone ID SSM309
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03803-1
Original site URL
Representative seq. ID SSM309Z
(Link to Original site)
Representative DNA sequence
>SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/
XXXXXXXXXXCAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCAAATCCAACCTTC
GCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACTTTTGAGAAAATC
TCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAAGGTGGTCAACAA
ATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATTGCTCTCGCTTCT
TTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAATAGACGTGTTAAT
GCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTATATTATTACAGAG
TTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAAGGTAAAAAGAAG
AAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAATAAAACAATCATG
GAACCAGCCTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCAGAAGATGCTGAA
TTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAATAATAAAATAAAA
ATAAAAATAAATAAATTATAAATAAAAATATCGCATGTAATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGGCCGCCCGCCAC
sequence update 1998. 4.22
Translated Amino Acid sequence
---GEFSNSVIENVSNPTFAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQI
NKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYIITEL
DESEREEFYRLKKVQGKKKKDLKAKEAQKEENSANKTIMEPASVHKVRSLIDDEPEDAEL
LYED*iylkkiik*nnkikikinkl*ikishvikkkkkkkkkkkraarh


Translated Amino Acid sequence (All Frames)
Frame A:
---r*ilklcn*krfksnlrrqndh*kccwcsftnf*enl*rcr*qftrtywsfkrwstn
**is*ith*scrsfncsrfftncfhyig*sy*nyk*tc*cn*irs*tkt*kyhqlyyyrv
g*k*krrvlqieessr*keerfeskrstkrrklck*nnhgtslcs*s*kshr**trrc*i
ii*rlnlfkknnkik**nknknk*iinkniacnkkkkkkkkkkkkgrpp


Frame B:
---GEFSNSVIENVSNPTFAVKMTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQI
NKSRESHIKAVEALIALASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYIITEL
DESEREEFYRLKKVQGKKKKDLKAKEAQKEENSANKTIMEPASVHKVRSLIDDEPEDAEL
LYED*iylkkiik*nnkikikinkl*ikishvikkkkkkkkkkkraarh


Frame C:
---vnsqtl*lktfqiqpspsk*plkmllvfiyqllrkslkvslaihknllvfqkvvnkl
inlvnhtlklskl*llsllykllslhwmkllklqidvlmqlnt*lnqnlkipsvillqsw
mkvkeksftd*rkfkvkrrki*kqkkhkkkktlqikqswnqplfiklevssmmnqkmlny
ymkikfi*kk**nkiik*k*k*inyk*kyrm**kkkkkkkkkkkgppa


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/ 805 0.0
SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/ 797 0.0
SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/ 757 0.0
SLA588 (SLA588Q) /CSM/SL/SLA5-D/SLA588Q.Seq.d/ 755 0.0
SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/ 698 0.0
SSH196 (SSH196Q) /CSM/SS/SSH1-D/SSH196Q.Seq.d/ 624 e-178
SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/ 569 e-161
SSB847 (SSB847Q) /CSM/SS/SSB8-B/SSB847Q.Seq.d/ 509 e-143
SSF460 (SSF460Q) /CSM/SS/SSF4-C/SSF460Q.Seq.d/ 466 e-130
SSH679 (SSH679Q) /CSM/SS/SSH6-D/SSH679Q.Seq.d/ 178 7e-44

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 460 0.0 3
BI506390|BI506390.1 BB170024A20D04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20D04 5', mRNA sequence. 64 2e-12 3
AW570895|AW570895.1 ra12e05.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;contains Alu repetitive element;, mRNA sequence. 76 6e-10 1
AW588730|AW588730.1 ra03h09.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 68 2e-07 1
BQ836546|BQ836546.1 rf47c05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 66 6e-07 1
CA994913|CA994913.1 rg20g04.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 66 6e-07 1
AZ540512|AZ540512.1 ENTDE86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 2e-06 3
BU720627|BU720627.1 SJM2BDG06 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 2e-05 3
AJ297976|AJ297976.1 Suberites domuncula mRNA for vacuolar proton pump protein (vatpd gene). 46 2e-05 2
BU720024|BU720024.1 SJM2AND09 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 2e-05 3
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK146129_1(AK146129|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 154 2e-36
(Q5RCS8) RecName: Full=V-type proton ATPase subunit D; ... 154 2e-36
BC031002_1(BC031002|pid:none) Homo sapiens ATPase, H+ transporti... 153 4e-36
(P39942) RecName: Full=V-type proton ATPase subunit D; ... 152 1e-35
AK150981_1(AK150981|pid:none) Mus musculus bone marrow macrophag... 152 1e-35
BT081771_1(BT081771|pid:none) Rana catesbeiana clone rcat-evr-50... 152 1e-35
BT079344_1(BT079344|pid:none) Esox lucius clone eluc-evq-534-179... 151 2e-35
AL928824_3(AL928824|pid:none) Zebrafish DNA sequence from clone ... 151 2e-35
BT043620_1(BT043620|pid:none) Salmo salar clone HM4_3768 ATPase ... 150 3e-35
BT077568_1(BT077568|pid:none) Lepeophtheirus salmonis clone lsal... 149 6e-35
protein update 2009. 6.15
PSORT

psg: 0.75 gvh: 0.34 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSM309 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM309Z
3' end seq.
>SSM309Z.Seq
----------CAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCAAATCCAACCTTC
GCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACTTTTGAGAAAATC
TCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAAGGTGGTCAACAA
ATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATTGCTCTCGCTTCT
TTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAATAGACGTGTTAAT
GCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTATATTATTACAGAG
TTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAAGGTAAAAAGAAG
AAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAATAAAACAATCATG
GAACCAGCCTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCAGAAGATGCTGAA
TTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAATAATAAAATAAAA
ATAAAAATAAATAAATTATAAATAAAAATATCGCATGTAATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGGGCCGCCCGCCAC
Length of 3' end seq. 680
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -