>SSM307 (SSM307Q) /CSM/SS/SSM3-A/SSM307Q.Seq.d/
XXXXXXXXXXAAAAAAAAAGAAAAAAAGAAAAAACATAAACACACAAAAAATAAAAATTA
TTTAAAGAAAATAATAAGAAAAATAAAATAAAATGACATCTCGTTATGCAAAAAGACTTC
AAAAAGAATTATTAGATTTAAAAACAAATCCGCCACCCTGCATTTCAATTACTGAAGGTG
ATAATTTAGATAAATGGGTCATAGCTGTGGATGGAACAGAGGGTTCAATTTATCAAGGAG
AACATTTCAAATTACAATTTAAATTCTCTTCTGGTTATCCATTAGATTCACCAGAGGTAA
TTTTCATTGGAACACCACCAATTCACCCACATATTTATAGCAATGGTCACATTTGTTTAT
CGATTTTATATGATAATTGGAGTCCAGCTTTAACTGTTTCATCAGTTTGTTTAAGTATTT
TGAGTATGTTAAGTGGTTGCACTGAAAAGATTCGTCCAACTGATGATTCAAAATATGTTT
CAAGAGTATTAAATAAAAGTCCAAAAGAAGTTAGATGGATGTTCCATGATGATACAGTAT
AAAAGAAAAAAAGAAAATAATAATAAAAAAAAAAAAAAAAAAAAATGCAAACTAAAGAAA
ATAATTAAAAAAAAAA

---kkkkkrknintqkikii*rk**ek*NKMTSRYAKRLQKELLDLKTNPPPCISITEGD
NLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLS
ILYDNWSPALTVSSVCLSILSMLSGCTEKIRPTDDSKYVSRVLNKSPKEVRWMFHDDTV*
kkkrk***kkkkkkmqtkenn*kk

Frame A:
---kkkkkrknintqkikii*rk**ek*NKMTSRYAKRLQKELLDLKTNPPPCISITEGD
NLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLS
ILYDNWSPALTVSSVCLSILSMLSGCTEKIRPTDDSKYVSRVLNKSPKEVRWMFHDDTV*
kkkrk***kkkkkkmqtkenn*kk


Frame B:
---kkrkkekt*thkk*klfkennkknkik*hlvmqkdfkkny*i*kqirhpafqllkvi
i*ings*lwmeqrvqfikenisnynlnsllvih*ihqr*fslehhqfthifiamvtfvyr
fymiigvql*lfhqfv*vf*vc*vvalkrfvqlmiqnmfqey*ikvqkkldgcsmmiqyk
rkkennnkkkkkkkcklkkiikkk


Frame C:
---kkekkkkhkhtknknylkkiirkik*ndislckktskriirfknksatlhfny*r**
fr*mghscgwnrgfnlsrrtfqiti*ilfwlsirftrgnfhwnttnsptyl*qwshlfid
fi**lessfncfislfkyfeyvkwlh*kdssn**fkicfksik*kskrs*mdvp**ysik
ekkkiiikkkkkknan*rk*lkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM307 (SSM307Q) /CSM/SS/SSM3-A/SSM307Q.Seq.d/                        884   0.0
SSI545 (SSI545Q) /CSM/SS/SSI5-B/SSI545Q.Seq.d/                        850   0.0
SSI767 (SSI767Q) /CSM/SS/SSI7-C/SSI767Q.Seq.d/                        688   0.0
AHR422 (AHR422Q) /CSM/AH/AHR4-A/AHR422Q.Seq.d/                        476   e-133
VHH102 (VHH102Q) /CSM/VH/VHH1-A/VHH102Q.Seq.d/                        464   e-130
VHH150 (VHH150Q) /CSM/VH/VHH1-C/VHH150Q.Seq.d/                        462   e-129
SSM846 (SSM846Q) /CSM/SS/SSM8-B/SSM846Q.Seq.d/                        278   1e-73
SSA879 (SSA879Q) /CSM/SS/SSA8-D/SSA879Q.Seq.d/                         48   2e-04
SHF605 (SHF605Q) /CSM/SH/SHF6-A/SHF605Q.Seq.d/                         42   0.010
VSK389 (VSK389Q) /CSM/VS/VSK3-D/VSK389Q.Seq.d/                         40   0.039

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI513984|BI513984.1 BB160014A20B04.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A20B04 5', mRNA sequence.    56  9e-06  2
BI513541|BI513541.1 BB160013A10G12 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160013A10G12 5', mRNA sequence.    56  9e-06  2
CF227935|CF227935.1 PtaXM0006F1F0111 Poplar cDNA library from mature xylem Populus x canescens cDNA 5', mRNA sequence.    52  2e-04  2
BI514137|BI514137.1 BB160014A21B04 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160014A21B04 5', mRNA sequence.    56  5e-04  1
BI511451|BI511451.1 BB160005B20B09 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160005B20B09 5', mRNA sequence.    56  5e-04  1
CF089384|CF089384.1 QHM21P12.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM21P12, mRNA sequence.    52  0.008  1
CB339471|CB339471.1 CA23EI03IIRb_E06 Cabernet Sauvignon Leaf - CA23EI Vitis vinifera cDNA clone CA23EI03IIRb_E06 3', mRNA sequence.    50  0.033  1
CA814328|CA814328.1 CA48LN09IIIR-G12 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN09IIIR-G12 3', mRNA sequence.    50  0.033  1
CA813300|CA813300.1 CA48LN09IIF-D4 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN09IIF-D4 5', mRNA sequence.    50  0.033  1
CF202052|CF202052.1 RR890915N0004_IVa_Ra_F09 Vitis sp. RR890915N Vitis hybrid cultivar cDNA clone RR890915N0004_IVa_Ra_F09 3', mRNA sequence.    50  0.033  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55EY8) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   313   3e-84
AM910995_350(AM910995|pid:none) Plasmodium knowlesi strain H chr...   184   2e-45
AK024050_1(AK024050|pid:none) Homo sapiens cDNA FLJ13988 fis, cl...   180   2e-44
AK001873_1(AK001873|pid:none) Homo sapiens cDNA FLJ11011 fis, cl...   180   3e-44
AK021735_1(AK021735|pid:none) Homo sapiens cDNA FLJ11673 fis, cl...   180   3e-44
BC116563_1(BC116563|pid:none) Danio rerio hypothetical protein F...   180   3e-44
(Q8VDW4) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   180   3e-44
(Q96B02) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   179   4e-44
BC139652_1(BC139652|pid:none) Danio rerio hypothetical protein F...   179   6e-44
AE013599_1204(AE013599|pid:none) Drosophila melanogaster chromos...   179   6e-44

 psg: 0.56  gvh: 0.54  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSM307 is cyt

>SSM307Z.Seq
----------
AAAAAAAAAGAAAAAAAGAAAAAACATAAACACACAAAAAATAAAAATT
ATTTAAAGAAAATAATAAGAAAAATAAAATAAAATGACATCTCGTTATGCAAAAAGACTT
CAAAAAGAATTATTAGATTTAAAAACAAATCCGCCACCCTGCATTTCAATTACTGAAGGT
GATAATTTAGATAAATGGGTCATAGCTGTGGATGGAACAGAGGGTTCAATTTATCAAGGA
GAACATTTCAAATTACAATTTAAATTCTCTTCTGGTTATCCATTAGATTCACCAGAGGTA
ATTTTCATTGGAACACCACCAATTCACCCACATATTTATAGCAATGGTCACATTTGTTTA
TCGATTTTATATGATAATTGGAGTCCAGCTTTAACTGTTTCATCAGTTTGTTTAAGTATT
TTGAGTATGTTAAGTGGTTGCACTGAAAAGATTCGTCCAACTGATGATTCAAAATATGTT
TCAAGAGTATTAAATAAAAGTCCAAAAGAAGTTAGATGGATGTTCCATGATGATACAGTA
TAAAAGAAAAAAAGAAAATAATAATAAAAAAAAAAAAAAAAAAAAATGCAAACTAAAGAA
AATAATTAAAAAAAAAA