>SSM271 (SSM271Q) /CSM/SS/SSM2-C/SSM271Q.Seq.d/
XXXXXXXXXXAATAAAAATGACAAAATTATATATAAAACAAAAAGTATTCTCTTTTGGTG
AGAAATATAATGTATATGATGAATTTAAAAATAAAAAATTTTATTGTGAAGGTTCTGTTT
TCAGTTGGGGTAGTAAAATAAAAATGTTTAGCCAAGATACAAATCAATTAATTTTTGTAA
TTAGACAAAAAGTTAAATTTTCATTTTATAAAAAATATTTTATCTATGATGGTAATGATA
ACCTTTTGGCAACAGTTAAACAAAAATCATTGTTTAAACCAAAATTAGAAATCGTTTTAA
ATGAAAATGAGCAATACACATGTAAAGGTGATTTTTTTAGTTATAATTTTCAAATCTTAG
ATGATGGTCTTCCAATTGGAAGTGTTACAAAGAGAGTATTATCATGGGGTGATACATATA
TGTTGGATATATCAGAGAATTTCGAACCATCCTTCTTTGTTGCAATTGTTATTACAATTG
ACGATTGTGTTCATAGAGAAAACAATGGATAATAGTTTATATTAATTTTTTGACCCCTTA
AAAAGTTTATATGAATATAAAAACAAAATTATTATTATTAAAATAAATTTAAAATAATCT
TTTAAATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCC

---IKMTKLYIKQKVFSFGEKYNVYDEFKNKKFYCEGSVFSWGSKIKMFSQDTNQLIFVI
RQKVKFSFYKKYFIYDGNDNLLATVKQKSLFKPKLEIVLNENEQYTCKGDFFSYNFQILD
DGLPIGSVTKRVLSWGDTYMLDISENFEPSFFVAIVITIDDCVHRENNG**filif*plk
kfi*i*kqnyyy*nkfkiif*iykkkkkkkkkkkkkgrr

Frame A:
---IKMTKLYIKQKVFSFGEKYNVYDEFKNKKFYCEGSVFSWGSKIKMFSQDTNQLIFVI
RQKVKFSFYKKYFIYDGNDNLLATVKQKSLFKPKLEIVLNENEQYTCKGDFFSYNFQILD
DGLPIGSVTKRVLSWGDTYMLDISENFEPSFFVAIVITIDDCVHRENNG**filif*plk
kfi*i*kqnyyy*nkfkiif*iykkkkkkkkkkkkkgrr


Frame B:
---*k*qnyi*nkkysllvrnimymmnlkiknfivkvlfsvgvvk*kclakiqin*fl*l
dkklnfhfiknilsmmvmitfwqqlnknhclnqn*ksf*mkmsnthvkviflviifks*m
mvfqlevlqreyyhgvihicwiyqrisnhpsllqlllqltivfiektmdnsly*ffdplk
slyeyknkiiiikinlk*sfkfikkkkkkkkkkkkkgaa


Frame C:
---kndkiiyktksilfw*ei*ci**i*k*kill*rfcfqlg**nknv*pryksinfcn*
tks*ifil*kifyl*w***pfgns*tkiiv*tkirnrfk*k*aihm*r*ff*l*fsnlr*
wssnwkcykesiimg*yiyvgyirefrtillccncyyn*rlcs*rkqwiivyinfltp*k
vymniktkllllk*i*nnllnl*kkkkkkkkkkkkrap

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM271 (SSM271Q) /CSM/SS/SSM2-C/SSM271Q.Seq.d/                        930   0.0
SSJ181 (SSJ181Q) /CSM/SS/SSJ1-D/SSJ181Q.Seq.d/                        906   0.0
SSF582 (SSF582Q) /CSM/SS/SSF5-D/SSF582Q.Seq.d/                        827   0.0
SSG313 (SSG313Q) /CSM/SS/SSG3-A/SSG313Q.Seq.d/                        821   0.0
VSJ596 (VSJ596Q) /CSM/VS/VSJ5-D/VSJ596Q.Seq.d/                        718   0.0
SSM108 (SSM108Q) /CSM/SS/SSM1-A/SSM108Q.Seq.d/                        704   0.0
SSF839 (SSF839Q) /CSM/SS/SSF8-B/SSF839Q.Seq.d/                        575   e-163
SSB341 (SSB341Q) /CSM/SS/SSB3-B/SSB341Q.Seq.d/                        521   e-147
SSD645 (SSD645Q) /CSM/SS/SSD6-B/SSD645Q.Seq.d/                        440   e-122
SFE281 (SFE281Q) /CSM/SF/SFE2-D/SFE281Q.Seq.d/                         40   0.042

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    34  0.002  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           42  0.008  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.015  9
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2.    38  0.016  10
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34  0.017  8
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    32  0.034  11
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    36  0.036  11
AP002379|AP002379.4 Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete sequence.    40  0.042  6
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36  0.051  9
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    38  0.055  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000813_3612(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    84   4e-15
AM412317_1228(AM412317|pid:none) Clostridium botulinum A str. AT...    79   1e-13
CP000962_1287(CP000962|pid:none) Clostridium botulinum A3 str. L...    78   2e-13
CP000560_3492(CP000560|pid:none) Bacillus amyloliquefaciens FZB4...    77   6e-13
CP000114_828(CP000114|pid:none) Streptococcus agalactiae A909, c...    69   2e-10
AP009256_1251(AP009256|pid:none) Bifidobacterium adolescentis AT...    64   3e-09
CP001022_2966(CP001022|pid:none) Exiguobacterium sibiricum 255-1...    60   6e-08
CP000387_717(CP000387|pid:none) Streptococcus sanguinis SK36, co...    45   0.002
CP000921_823(CP000921|pid:none) Streptococcus pneumoniae Taiwan1...    38   0.30
CP000048_245(CP000048|pid:none) Borrelia hermsii DAH, complete g...    36   0.86

 psg: 0.69  gvh: 0.27  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSM271 is cyt

>SSM271Z.Seq
----------AATAAAAATGACAAAATTATATATAAAACAAAAAGTATTCTCTTTTGGTG
AGAAATATAATGTATATGATGAATTTAAAAATAAAAAATTTTATTGTGAAGGTTCTGTTT
TCAGTTGGGGTAGTAAAATAAAAATGTTTAGCCAAGATACAAATCAATTAATTTTTGTAA
TTAGACAAAAAGTTAAATTTTCATTTTATAAAAAATATTTTATCTATGATGGTAATGATA
ACCTTTTGGCAACAGTTAAACAAAAATCATTGTTTAAACCAAAATTAGAAATCGTTTTAA
ATGAAAATGAGCAATACACATGTAAAGGTGATTTTTTTAGTTATAATTTTCAAATCTTAG
ATGATGGTCTTCCAATTGGAAGTGTTACAAAGAGAGTATTATCATGGGGTGATACATATA
TGTTGGATATATCAGAGAATTTCGAACCATCCTTCTTTGTTGCAATTGTTATTACAATTG
ACGATTGTGTTCATAGAGAAAACAATGGATAATAGTTTATATTAATTTTTTGACCCCTTA
AAAAGTTTATATGAATATAAAAACAAAATTATTATTATTAAAATAAATTTAAAATAATCT
TTTAAATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCC