>SSM265 (SSM265Q) /CSM/SS/SSM2-C/SSM265Q.Seq.d/
AAATGTCCGCCTCAGCAGATCAAATTCAAGAATGTTTCAGTATCTTTGATAAAGATAATG
ACGGTAAGGTCTCAGTTGAAGATATTGGAGCTTGTTTAAGATCATTAGGTAAAAGCCCAA
CCATGGCAGATATTGAAGCATTAAAGACTGAAATTGGTGCTAAAGAATTTGATATCAATA
CATTAAAGAGCATTTACAAGAAACCAAACATTAAAACTCCACAAGAGCAACAAAAGGAAA
TGTTAGATGCATTCAAAGCCCTCGATAAAGAAGGCCATGGTACCATTCAAGGTGCTGAAT
TACGTCAATTATTAACCACTCTTGGTGATTACTTATCAACCGCTGAAGTTGATGAATTAT
TTAAGGAAATCTCTGTCGATAGTACTACTGGTGCCGTTTCATATGCAAGCTTAGTCAATA
CCATCGTTTCTGGTTATCCATTAGGCGGTTTCTAAATTATTATTATATAAAAAAAAAAAA
AAAAAAAAAAAATGAAATTTATTTTTAAATTATCATAAAATAGA

MSASADQIQECFSIFDKDNDGKVSVEDIGACLRSLGKSPTMADIEALKTEIGAKEFDINT
LKSIYKKPNIKTPQEQQKEMLDAFKALDKEGHGTIQGAELRQLLTTLGDYLSTAEVDELF
KEISVDSTTGAVSYASLVNTIVSGYPLGGF*iiii*kkkkkkkmkfifkls*nr

Frame A:
kcppqqikfknvsvslikimtvrsqlkilelv*dh*vkaqpwqilkh*rlklvlknlisi
h*raftrnqtlklhksnkrkc*mhskpsikkamvpfkvlnyvny*pllvityqplklmny
lrkslsivllvpfhmqa*sipsflvih*avsklllykkkkkkkk*nlflnyhki


Frame B:
nvrlsrsnsrmfqyl**r**r*gls*rywslfkiir*kpnhgry*sikd*nwc*ri*yqy
ikehlqetkh*nstratkgnvrciqspr*rrpwyhsrc*itsiinhsw*llinr*s**ii
*gnlcr*yywcrficklsqyhrfwlsirrflnyyyikkkkkkkneiyf*iiik*


Frame C:
MSASADQIQECFSIFDKDNDGKVSVEDIGACLRSLGKSPTMADIEALKTEIGAKEFDINT
LKSIYKKPNIKTPQEQQKEMLDAFKALDKEGHGTIQGAELRQLLTTLGDYLSTAEVDELF
KEISVDSTTGAVSYASLVNTIVSGYPLGGF*iiii*kkkkkkkmkfifkls*nr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD769 (VSD769Q) /CSM/VS/VSD7-C/VSD769Q.Seq.d/                        928   0.0
VSD135 (VSD135Q) /CSM/VS/VSD1-B/VSD135Q.Seq.d/                        928   0.0
VSB729 (VSB729Q) /CSM/VS/VSB7-B/VSB729Q.Seq.d/                        928   0.0
SSM265 (SSM265Q) /CSM/SS/SSM2-C/SSM265Q.Seq.d/                        928   0.0
SSL189 (SSL189Q) /CSM/SS/SSL1-D/SSL189Q.Seq.d/                        928   0.0
SSK774 (SSK774Q) /CSM/SS/SSK7-D/SSK774Q.Seq.d/                        928   0.0
SSJ645 (SSJ645Q) /CSM/SS/SSJ6-B/SSJ645Q.Seq.d/                        928   0.0
SSF158 (SSF158Q) /CSM/SS/SSF1-C/SSF158Q.Seq.d/                        928   0.0
SSD387 (SSD387Q) /CSM/SS/SSD3-D/SSD387Q.Seq.d/                        928   0.0
SSE889 (SSE889Q) /CSM/SS/SSE8-D/SSE889Q.Seq.d/                        898   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X54161|X54161.1 D.discoideum myosin essential light chain gene.   920  0.0  2
M19337|M19337.1 D.discoideum myosin light chain mRNA, complete cds.   870  0.0  1
AF466304|AF466304.1 Dictyostelium discoideum ABC transporter AbcB1 (abcB1) gene, complete cds.    40  0.68  2
AC120584|AC120584.4 Rattus norvegicus clone CH230-500J13, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    38  1.0  2
AL359456|AL359456.15 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-517L23.    44  1.7  1
CA860313|CA860313.1 EST634807 GVSP Glomus versiforme cDNA clone pGVSP19-16, mRNA sequence.    44  1.7  1
BB233380|BB233380.1 Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630043E17, 3' end partial sequence.    44  1.7  1
AC006920|AC006920.11 Arabidopsis thaliana chromosome 2 clone F26H6 map mi398, complete sequence.    44  1.7  1
AC095047|AC095047.2 Homo sapiens BAC clone RP11-219G14 from 4, complete sequence.    44  1.7  1
AF478880|AF478880.1 Renealmia battenbergiana tRNA-Lys (trnK) gene, intron; and maturase K (matK) gene, complete cds; chloroplast genes for chloroplast products.    44  1.7  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P09402) RecName: Full=Myosin, essential light chain; AltName: F...   292   3e-78
A28127(A28127;B48404;A48404;S20728) myosin light chain, nonmuscl...   286   2e-76
A29910(A29910)myosin calcium-binding light chain - slime mold (P...   194   9e-49
(P08053) RecName: Full=Myosin regulatory light chain; AltName: F...   193   2e-48
J03499_1(J03499|pid:none) Physarum polycephalum myosin calcium-b...   193   2e-48
CR382133_531(CR382133|pid:none) Debaryomyces hansenii strain CBS...   101   1e-20
CP000497_44(CP000497|pid:none) Pichia stipitis CBS 6054 chromoso...   101   1e-20
AF084426_1(AF084426|pid:none) Synthetic construct calmodulin mut...    97   2e-19
DQ122882_1(DQ122882|pid:none) Chlamydomonas incerta calmodulin m...    97   2e-19
(P04352) RecName: Full=Calmodulin;          Short=CaM;  &M20729_...    97   2e-19

 psg: 0.75  gvh: 0.47  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSM265 is cyt

>SSM265E.Seq
AAATGTCCGCCTCAGCAGATCAAATTCAAGAATGTTTCAGTATCTTTGATAAAGATAATG
ACGGTAAGGTCTCAGTTGAAGATATTGGAGCTTGTTTAAGATCATTAGGTAAAAGCCCAA
CCATGGCAGATATTGAAGCATTAAAGACTGAAATTGGTGCTAAAGAATTTGATATCAATA
CATTAAAGAGCATTTACAAGAAACCAAACATTAAAACTCCACAAGAGCAACAAAAGGAAA
TGTTAGATGCATTCAAAGCCCTCGATAAAGAAGGCCATGGTACCATTCAAGGTGCTGAAT
TACGTCAATTATTAACCACTCTTGGTGATTACTTATCAACCGCTGAAGTTGATGAATTAT
TTAAGGAAATCTCTGTCGATAGTACTACTGGTGCCGTTTCATATGCAAGCTTAGTCAATA
CCATCGTTTCTGGTTATCCATTAGGCGGTTTCTAAATTATTATTATATAAAAAAAAAAAA
AAAAAAAAAAAATGAAATTTATTTTTAAATTATCATAAAATAGA