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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM256
Library SS
(Link to library)
Clone ID SSM256
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09509-1
Original site URL
Representative seq. ID SSM256P
(Link to Original site)
Representative DNA sequence 
>SSM256 (SSM256Q) /CSM/SS/SSM2-C/SSM256Q.Seq.d/
CGTTAACATAAAAAAAAAACTTTTTTTTTCTTTTTAAAAAACAAATTTATTTATATTTAT
ATATATTTATATTAAATACAGAATGGAATCATATTCTATTGAAGATTTAGAAAATAAATT
AAAACAAGATAAAACAGAGCTTCTTGAAATTGAAGCATTATTAGAAGAGGATAATAACGA
TGATGAATTACAAACATTAAAAAATGATTTAATTACAATTATAAAAACAACAACAGATTT
AATTATAAAGAAACAAAGAGAAAAAGAAACCAATAATATAATTAACAATXXXXXXXXXXG
TATAGAGCAAAGATTGATTCAATTAATAAAGATGGATCATTTGTTGTAACATACACTGAT
TATGGTAATACGGAAACTTTAACATTTGATAAAATTAGACCACCAACTAGATCTTTAAAA
TTATTAGCAAATCAAACATTGGAACAAAAAAATATTTACAAGCACCCGATCAAATTCAAG
TGATTCCAAAATCTTTAAAAATTTTACCAGAGGATAGTGAAGAGGTTAAAAAACAAAAAC
AAAAGAAAATTCATTCAATCAAATCTATGAATCGTTTGAAAAAAGTTGAAGAAGAAGGTA
AACAAAAAACTCAAGCTTGGAAAGATTTCGTAAATAAACCAAAGAAATCTATACCTGGCA
CTTTTACTGATAGAAAAAAGACTTCAATGTTTTCAACTGGTGATGGTATTCATAGTAAAG
TAGGTGTTATTGGTAGTGGTAGAGGTATGACTGAATCTCAACAATTTCAATCTTTAGCTA
AAAAATCTTCTTCAATTTATCCTTAAAAAAAAAAAAAAAAAAACTCTATATTTATTTATT
TATTTTTTTTTTCTTTTTCTTTTATTTCTTTTTTTTTTTTTAAAAATTAGAGGAAAAAAA
AAAAACAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
vnikkklffsf*KTNLFIFIYIYIKYRMESYSIEDLENKLKQDKTELLEIEALLEEDNND
DELQTLKNDLITIIKTTTDLIIKKQREKETNNIINN---

---YRAKIDSINKDGSFVVTYTDYGNTETLTFDKIRPPTRSLKLLANQTLEQKNIYKHPI
KFK*fqnl*kfyqrivkrlknknkrkfiqsnl*iv*kklkkkvnkklklgkis*inqrnl
ylallliekrlqcfqlvmvfivk*vllvvvev*lnlnnfnl*lknllqfilkkkkkktly
lfiyffflfllflffflkirgkkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
r*hkkktfffflknkfiyiyiyly*iqngiify*rfrk*iktr*nras*n*siirrg**r
**itnikk*fnynyknnnrfnyketkrkrnq*yn*q---

---v*skd*fn**rwiiccnih*lw*ygnfni**n*ttn*ifkiisksnigtkkylqapd
qiqvipkslkilpedseevkkqkqkkihsiksmnrlkkveeegkqktqawkdfvnkpkks
ipgtftdrkktsmfstgdgihskvgvigsgrgmtesqqfqslakksssiyp*kkkkknsi
fiylfffsfsfisffffkn*rkkkkq

Frame B:
vnikkklffsf*KTNLFIFIYIYIKYRMESYSIEDLENKLKQDKTELLEIEALLEEDNND
DELQTLKNDLITIIKTTTDLIIKKQREKETNNIINN---

---YRAKIDSINKDGSFVVTYTDYGNTETLTFDKIRPPTRSLKLLANQTLEQKNIYKHPI
KFK*fqnl*kfyqrivkrlknknkrkfiqsnl*iv*kklkkkvnkklklgkis*inqrnl
ylallliekrlqcfqlvmvfivk*vllvvvev*lnlnnfnl*lknllqfilkkkkkktly
lfiyffflfllflffflkirgkkkn

Frame C:
lt*kknffflfkkqiylylyifilntewnhillki*kin*nkikqsflklkhy*kriitm
mnykh*kmi*lql*kqqqi*l*rnkekkkpii*lt---

---ieqrliqlikmdhll*htlimvirkl*hlikldhqldl*ny*qikhwnkkiftstrs
nssdskifknftrg**rg*ktktkensfnqiyesfeks*rrr*tknsslerfrk*tkeiy
twhfy**kkdfnvfnw*wys**srcyw*w*ryd*istisifs*kiffnlslkkkkkklyi
ylfiffffffyfffff*kleekkkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM256 (SSM256Q) /CSM/SS/SSM2-C/SSM256Q.Seq.d/                        799   0.0
VSG646 (VSG646Q) /CSM/VS/VSG6-B/VSG646Q.Seq.d/                         44   0.004
VSG178 (VSG178Q) /CSM/VS/VSG1-D/VSG178Q.Seq.d/                         44   0.004
CFG862 (CFG862Q) /CSM/CF/CFG8-C/CFG862Q.Seq.d/                         44   0.004
AFE212 (AFE212Q) /CSM/AF/AFE2-A/AFE212Q.Seq.d/                         44   0.004
SFE493 (SFE493Q) /CSM/SF/SFE4-D/SFE493Q.Seq.d/                         42   0.015
AFK120 (AFK120Q) /CSM/AF/AFK1-A/AFK120Q.Seq.d/                         42   0.015
VSD481 (VSD481Q) /CSM/VS/VSD4-D/VSD481Q.Seq.d/                         40   0.058
VSB230 (VSB230Q) /CSM/VS/VSB2-B/VSB230Q.Seq.d/                         40   0.058
VHJ822 (VHJ822Q) /CSM/VH/VHJ8-A/VHJ822Q.Seq.d/                         40   0.058
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL935186|AL935186.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-250M6.    34  0.006  6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32  0.009  11
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    40  0.009  7
AC125335|AC125335.1 Homo sapiens chromosome UNK clone RP11-569P24, *** SEQUENCING IN PROGRESS ***, 104 unordered pieces.    38  0.013  6
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    34  0.013  6
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36  0.014  7
AF382392|AF382392.1 Trichodesmium sp. IMS101 nitrogen regulatory protein (ntcA), enoyl carrier reductase (fabI), and imidazoleglycerole-phosphate dehydrogenase (hisB) genes, complete cds; and unknown genes.    52  0.015  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32  0.017  9
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34  0.021  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32  0.022  9
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF145410_1(EF145410|pid:none) Populus trichocarpa clone WS01124_...    61   5e-10
BT002938_1(BT002938|pid:none) Arabidopsis thaliana clone RAFL14-...    58   4e-09
BT088107_1(BT088107|pid:none) Zea mays full-length cDNA clone ZM...    62   2e-08
AP004584_14(AP004584|pid:none) Oryza sativa Japonica Group genom...    59   2e-07
BT052698_1(BT052698|pid:none) Medicago truncatula clone MTYFD_FE...    59   3e-07
CP001331_442(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    45   0.003
(Q91W18) RecName: Full=Tudor domain-containing protein 3;              39   0.24
(Q66HC1) RecName: Full=Tudor domain-containing protein 3;  &BC08...    39   0.24
AK033390_1(AK033390|pid:none) Mus musculus 16 days embryo lung c...    39   0.31
BC055609_1(BC055609|pid:none) Danio rerio zgc:77174, mRNA (cDNA ...    38   0.41
protein update 2009. 6.15
PSORT 

 psg: 0.95  gvh: 0.19  alm: 0.48  top: 0.33  tms: 0.00  mit: 0.29  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSM256 is nuc
5' end seq. ID SSM256F
5' end seq. 
>SSM256F.Seq
CGTTAACATAAAAAAAAAACTTTTTTTTTCTTTTTAAAAAACAAATTTATTTATATTTAT
ATATATTTATATTAAATACAGAATGGAATCATATTCTATTGAAGATTTAGAAAATAAATT
AAAACAAGATAAAACAGAGCTTCTTGAAATTGAAGCATTATTAGAAGAGGATAATAACGA
TGATGAATTACAAACATTAAAAAATGATTTAATTACAATTATAAAAACAACAACAGATTT
AATTATAAAGAAACAAAGAGAAAAAGAAACCAATAATATAATTAACAAT----------
Length of 5' end seq. 289
3' end seq. ID SSM256Z
3' end seq. 
>SSM256Z.Seq
----------GTATAGAGCAAAGATTGATTCAATTAATAAAGATGGATCATTTGTTGTAA
CATACACTGATTATGGTAATACGGAAACTTTAACATTTGATAAAATTAGACCACCAACTA
GATCTTTAAAATTATTAGCAAATCAAACATTGGAACAAAAAAATATTTACAAGCACCCGA
TCAAATTCAAGTGATTCCAAAATCTTTAAAAATTTTACCAGAGGATAGTGAAGAGGTTAA
AAAACAAAAACAAAAGAAAATTCATTCAATCAAATCTATGAATCGTTTGAAAAAAGTTGA
AGAAGAAGGTAAACAAAAAACTCAAGCTTGGAAAGATTTCGTAAATAAACCAAAGAAATC
TATACCTGGCACTTTTACTGATAGAAAAAAGACTTCAATGTTTTCAACTGGTGATGGTAT
TCATAGTAAAGTAGGTGTTATTGGTAGTGGTAGAGGTATGACTGAATCTCAACAATTTCA
ATCTTTAGCTAAAAAATCTTCTTCAATTTATCCTTAAAAAAAAAAAAAAAAAAACTCTAT
ATTTATTTATTTATTTTTTTTTTCTTTTTCTTTTATTTCTTTTTTTTTTTTTAAAAATTA
GAGGAAAAAAAAAAAACAA
Length of 3' end seq. 609
Connected seq. ID SSM256P
Connected seq. 
>SSM256P.Seq
CGTTAACATAAAAAAAAAACTTTTTTTTTCTTTTTAAAAAACAAATTTATTTATATTTAT
ATATATTTATATTAAATACAGAATGGAATCATATTCTATTGAAGATTTAGAAAATAAATT
AAAACAAGATAAAACAGAGCTTCTTGAAATTGAAGCATTATTAGAAGAGGATAATAACGA
TGATGAATTACAAACATTAAAAAATGATTTAATTACAATTATAAAAACAACAACAGATTT
AATTATAAAGAAACAAAGAGAAAAAGAAACCAATAATATAATTAACAAT----------G
TATAGAGCAAAGATTGATTCAATTAATAAAGATGGATCATTTGTTGTAACATACACTGAT
TATGGTAATACGGAAACTTTAACATTTGATAAAATTAGACCACCAACTAGATCTTTAAAA
TTATTAGCAAATCAAACATTGGAACAAAAAAATATTTACAAGCACCCGATCAAATTCAAG
TGATTCCAAAATCTTTAAAAATTTTACCAGAGGATAGTGAAGAGGTTAAAAAACAAAAAC
AAAAGAAAATTCATTCAATCAAATCTATGAATCGTTTGAAAAAAGTTGAAGAAGAAGGTA
AACAAAAAACTCAAGCTTGGAAAGATTTCGTAAATAAACCAAAGAAATCTATACCTGGCA
CTTTTACTGATAGAAAAAAGACTTCAATGTTTTCAACTGGTGATGGTATTCATAGTAAAG
TAGGTGTTATTGGTAGTGGTAGAGGTATGACTGAATCTCAACAATTTCAATCTTTAGCTA
AAAAATCTTCTTCAATTTATCCTTAAAAAAAAAAAAAAAAAAACTCTATATTTATTTATT
TATTTTTTTTTTCTTTTTCTTTTATTTCTTTTTTTTTTTTTAAAAATTAGAGGAAAAAAA
AAAAACAA
Length of connected seq. 898
Full length Seq ID -
Full length Seq. -
Length of full length seq. -