AFL805
Library AF
(Link to library)
Clone ID AFL805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFL805 (AFL805Q) /CSM/AF/AFL8-A/AFL805Q.Seq.d/
XXXXXXXXXXAAGGTTTTAGGTNAAAAAAAAAAGGTTTTTTTTTANCCNTGGNAAAAAAA
ANAAAAAACNAAAAANNAANAANAANAANAAAAANAANAANAANAANAANAANAANAANA
ANAANAAAANAAAAANAANAANAANNAAAAANTCCANCNGAAAAAAAAAAAATAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
---GFRXKKKGFFLXXXKKXKNXKXXXXXKXXXXXXXXXXXKXKXXXXKXPXEKKKIK


Translated Amino Acid sequence (All Frames)
Frame A:
---rf*vkkkrfffxxgkkxkkxkxxxxxkxxxxxxxxxxxkxkxxxxkxsxxkkknk


Frame B:
---GFRXKKKGFFLXXXKKXKNXKXXXXXKXXXXXXXXXXXKXKXXXXKXPXEKKKIK


Frame C:
---vlgxkkkvffxpwxkkxktkxxxxxxkxxxxxxxxxxxxkxxxxxkxxxkkkk*k


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5490
Number of Sequences: 97611
Number of extensions: 5490
Number of successful extensions: 241
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 0
length of query: 178
length of database: 80,480,566
effective HSP length: 17
effective length of query: 161
effective length of database: 78,821,179
effective search space: 12690209819
effective search space used: 12690209819
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 3
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 6,047,982
Number of extensions: 271290
Number of successful extensions: 15313
Number of sequences better than 10.0: 0
Length of query: 178
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 156
Effective length of database: 99,544,435,898
Effective search space: 15528932000088
Effective search space used: 15528932000088
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)









Dictyostelium discoideum cDNA Project Home



dna update 2009. 4. 8
Homology vs Protein

***** No hits found ******

Lambda K H
0.294 0.118 0.289

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 63,503,839
protein update 2009. 4. 4
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFL805 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFL805Z
3' end seq.
>AFL805Z.Seq
XXXXXXXXXXAAGGTTTTAGGTNAAAAAAAAAAGGTTTTTTTTTANCCNTGGNAAAAAAA
ANAAAAAACNAAAAANNAANAANAANAANAAAAANAANAANAANAANAANAANAANAANA
ANAANAAAANAAAAANAANAANAANNAAAAANTCCANCNGAAAAAAAAAAAATAAAAA
Length of 3' end seq. 178
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -