SSM208
Library SS
(Link to library)
Clone ID SSM208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13936-1
Original site URL
Representative seq. ID SSM208Z
(Link to Original site)
Representative DNA sequence
>SSM208 (SSM208Q) /CSM/SS/SSM2-A/SSM208Q.Seq.d/
XXXXXXXXXXTGGTATTGATGCACGTCTCGGTGAGATTGGTGCTGCAATCCAAGAGGTTA
TGGAATCCCACGAAATCGAACTCAATGGTAAAACCTACCCAATTCGTTCCATTCGTAATT
TGAATGGTCATTCAATTCGTCCATACGTCATTCATGGTGGTAAAACCGTACCAATCGTTA
GAGGTGGTGAAATGACAAAAATGGAAGAAGGTGAATTTTATGCAATCGAAACTTTTGGTT
CCACTGGTAGAGCTCAAGTCATTGAGGATTTGGAATGTTCTCATTATATGAAAACCGATT
ATCAAACCACTGTTAGATTACCAAAAGCAAAACAACTCTTACAATATATCAACAAAAATT
ATGATACCCTTTGTTTCTGTCGTCGTTGGTTAGATAGAGCAGGTGAAGATAAACATATAT
TGGCTTTAAATAATCTTTGTGATTTAGGTATCATTCAACGTCATGCACCATTAGTTGATT
CAAAAGGTTCTTATGTTGCTCAATATGAACATACTTTATTATTAAAACCAACTGCAAAAG
AAGTTTTATCAAGAGGTGATGATTATTAAATTTAGTAAAAA
sequence update 1998. 2.28
Translated Amino Acid sequence
---GIDARLGEIGAAIQEVMESHEIELNGKTYPIRSIRNLNGHSIRPYVIHGGKTVPIVR
GGEMTKMEEGEFYAIETFGSTGRAQVIEDLECSHYMKTDYQTTVRLPKAKQLLQYINKNY
DTLCFCRRWLDRAGEDKHILALNNLCDLGIIQRHAPLVDSKGSYVAQYEHTLLLKPTAKE
VLSRGDDY*i**k


Translated Amino Acid sequence (All Frames)
Frame A:
---GIDARLGEIGAAIQEVMESHEIELNGKTYPIRSIRNLNGHSIRPYVIHGGKTVPIVR
GGEMTKMEEGEFYAIETFGSTGRAQVIEDLECSHYMKTDYQTTVRLPKAKQLLQYINKNY
DTLCFCRRWLDRAGEDKHILALNNLCDLGIIQRHAPLVDSKGSYVAQYEHTLLLKPTAKE
VLSRGDDY*i**k


Frame B:
---vlmhvsvrlvlqskrlwnptksnsmvkptqfvpfvi*mviqfvhtsfmvvkpyqsle
vvk*qkwkkvnfmqskllvplvelkslriwnvlii*kpiikplldyqkqnnsynistkim
ipfvsvvvg*ieqvkiniywl*iifvi*vsfnvmhh*liqkvlmllnmnilyy*nqlqkk
fyqevmiikfsk


Frame C:
---y*ctsr*dwccnprgygiprnrtqw*nlpnsfhs*fewsfnssirhsww*nrtnr*r
w*ndkngrr*ilcnrnfwfhw*sssh*gfgmfslyenrlsnhc*itkskttltiyqqkl*
yplflsslvr*sr*r*tyigfk*sl*fryhstsctis*fkrflccsi*tyfiiktnckrs
fikr**llnlvk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM208 (SSM208Q) /CSM/SS/SSM2-A/SSM208Q.Seq.d/ 1132 0.0
SSF817 (SSF817Q) /CSM/SS/SSF8-A/SSF817Q.Seq.d/ 1132 0.0
SLH132 (SLH132Q) /CSM/SL/SLH1-B/SLH132Q.Seq.d/ 1132 0.0
SSI805 (SSI805Q) /CSM/SS/SSI8-A/SSI805Q.Seq.d/ 1124 0.0
SLH323 (SLH323Q) /CSM/SL/SLH3-A/SLH323Q.Seq.d/ 1122 0.0
SSI414 (SSI414Q) /CSM/SS/SSI4-A/SSI414Q.Seq.d/ 1094 0.0
AFN321 (AFN321Q) /CSM/AF/AFN3-A/AFN321Q.Seq.d/ 1076 0.0
VFL742 (VFL742Q) /CSM/VF/VFL7-B/VFL742Q.Seq.d/ 1074 0.0
VFI271 (VFI271Q) /CSM/VF/VFI2-C/VFI271Q.Seq.d/ 1074 0.0
AFL569 (AFL569Q) /CSM/AF/AFL5-C/AFL569Q.Seq.d/ 1074 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF211492|CF211492.1 CAB20007_Ia_Ra_H10 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20007_Ia_Ra_H10 3', mRNA sequence. 64 1e-15 2
BM534961|BM534961.1 EST587983 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG64G9 5' end, mRNA sequence. 52 2e-12 3
BI516879|BI516879.1 BB160023B20D07 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B20D07 5', mRNA sequence. 46 2e-12 4
CF049060|CF049060.1 QCL30c12.yg QCL Zea mays cDNA clone QCL30c12, mRNA sequence. 54 4e-11 2
CD980670|CD980670.1 QAI15b03.yg QAI Zea mays cDNA clone QAI15b03, mRNA sequence. 54 4e-11 2
CD980804|CD980804.1 QAI16h06.yg QAI Zea mays cDNA clone QAI16h06, mRNA sequence. 54 5e-11 2
CD980675|CD980675.1 QAI15b09.yg QAI Zea mays cDNA clone QAI15b09, mRNA sequence. 54 5e-11 2
CD980650|CD980650.1 QAI14h02.yg QAI Zea mays cDNA clone QAI14h02, mRNA sequence. 54 5e-11 2
CD981218|CD981218.1 QAI21e09.yg QAI Zea mays cDNA clone QAI21e09, mRNA sequence. 54 5e-11 2
CD981136|CD981136.1 QAI20d07.yg QAI Zea mays cDNA clone QAI20d07, mRNA sequence. 54 5e-11 2
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU967449_1(EU967449|pid:none) Zea mays clone 303197 methionine a... 268 6e-71
BC043889_1(BC043889|pid:none) Xenopus laevis methionine aminopep... 265 7e-70
AJ720769_1(AJ720769|pid:none) Gallus gallus mRNA for hypothetica... 265 9e-70
BC070892_1(BC070892|pid:none) Rattus norvegicus methionyl aminop... 263 3e-69
AK165845_1(AK165845|pid:none) Mus musculus lung RCB-0558 LLC cDN... 263 3e-69
(O08663) RecName: Full=Methionine aminopeptidase 2; Sho... 263 3e-69
BC091150_1(BC091150|pid:none) Rattus norvegicus methionyl aminop... 263 3e-69
BC122516_1(BC122516|pid:none) Xenopus laevis hypothetical protei... 261 1e-68
BC073553_1(BC073553|pid:none) Xenopus laevis hypothetical protei... 261 1e-68
BT072460_1(BT072460|pid:none) Salmo salar clone ssal-rgf-526-141... 261 1e-68
protein update 2009. 6.15
PSORT

psg: 0.75 gvh: 0.38 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for SSM208 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM208Z
3' end seq.
>SSM208Z.Seq
----------TGGTATTGATGCACGTCTCGGTGAGATTGGTGCTGCAATCCAAGAGGTTA
TGGAATCCCACGAAATCGAACTCAATGGTAAAACCTACCCAATTCGTTCCATTCGTAATT
TGAATGGTCATTCAATTCGTCCATACGTCATTCATGGTGGTAAAACCGTACCAATCGTTA
GAGGTGGTGAAATGACAAAAATGGAAGAAGGTGAATTTTATGCAATCGAAACTTTTGGTT
CCACTGGTAGAGCTCAAGTCATTGAGGATTTGGAATGTTCTCATTATATGAAAACCGATT
ATCAAACCACTGTTAGATTACCAAAAGCAAAACAACTCTTACAATATATCAACAAAAATT
ATGATACCCTTTGTTTCTGTCGTCGTTGGTTAGATAGAGCAGGTGAAGATAAACATATAT
TGGCTTTAAATAATCTTTGTGATTTAGGTATCATTCAACGTCATGCACCATTAGTTGATT
CAAAAGGTTCTTATGTTGCTCAATATGAACATACTTTATTATTAAAACCAACTGCAAAAG
AAGTTTTATCAAGAGGTGATGATTATTAAATTTAGTAAAAA
Length of 3' end seq. 571
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -