SSM187
Library SS
(Link to library)
Clone ID SSM187
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05843-1
Original site URL
Representative seq. ID SSM187E
(Link to Original site)
Representative DNA sequence
>SSM187 (SSM187Q) /CSM/SS/SSM1-D/SSM187Q.Seq.d/
AAATGAAAGAATTATAAATTTTAAAATAAAGGATAAAGAATCCTTTTGTGAAGAATATTT
AAAATATAAGATTTTTGAAAAGACATTTATTCCAATAGCATTTCAATATTTAAAATTAGT
GTCATCAAATTTAGATAGTATAGAACAACAACAGCAACAACAACAGCAACAACAACAACA
ACAACAACAACATTTAAAAGTTTATGATTTATTATTACGTGTAAATGGTGGTAAAGGTGG
TTTTGGTTCATTATTGAAATCTTCAGGTACAAAAGTTGGTCAAAAGAAAACAACCAATTT
CGATGCATGTAGAGATTTAAGTGGTAGAAGATTAAGACATGTAAATAATGAAGCTAGAAT
TAAACAATGGTTAGAAGATGAAGAAGCTAGAAAGATTGCAATGCAAGAATTAAAAAAGAA
ATTTAATGATTCAAATGATAAACATGTTGAAGAATTTAATGATACACAATTTCAAAAAGA
AACTGAAGATATACATAAAAAAGTTTCAAATTCTGTTGAACAAGGTTTAAAATTACAAAA
AGAAAATAAAAATTTAGAAAACAATAAAACTACTACCACCACCACAACTACCACTACTAC
TACAACTGCCACTACACCAAAAACAGTTGATAGATTTAAAAAACCATCAAATAATAATAC
GAAACCAATTTCAATGTTTGTTCCAGATTTCGATGATGATGATGAAGAAGAAGAAGAAGA
GGAAAGTGAGGAAGAGAAAAAAGATTCAATTAAAACAAAAGTTTCAAAGACTAAATAATC
ATTAAAGGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAATAAAATAAAATC
TAATGTGTATATTTGTCAATTTTTTTTAATAT
sequence update 1999. 6.28
Translated Amino Acid sequence
NERIINFKIKDKESFCEEYLKYKIFEKTFIPIAFQYLKLVSSNLDSIEQQQQQQQQQQQQ
QQQHLKVYDLLLRVNGGKGGFGSLLKSSGTKVGQKKTTNFDACRDLSGRRLRHVNNEARI
KQWLEDEEARKIAMQELKKKFNDSNDKHVEEFNDTQFQKETEDIHKKVSNSVEQGLKLQK
ENKNLENNKTTTTTTTTTTTTTATTPKTVDRFKKPSNNNTKPISMFVPDFDDDDEEEEEE
ESEEEKKDSIKTKVSKTK*slke*kkkkkkkkkknnkiksnvyicqffli


Translated Amino Acid sequence (All Frames)
Frame A:
k*knykf*nkg*rill*rifki*df*kdiysnsisifkisvikfr*yrtttatttatttt
ttttfksl*fiitckww*rwfwfiieifrykswskennqfrcm*rfkw*kiktck**s*n
*tmvrr*rs*kdcnarikkei**fk**tc*ri**ytiskrn*ryt*ksfkfc*trfkitk
rk*kfrkq*nyyhhhnyhyyynchytkns**i*ktik**yetnfnvcsrfr****rrrrr
gk*grekrfn*nksfkd*iiikgvkkkkkkkkkke**nki*cvylsiffn


Frame B:
NERIINFKIKDKESFCEEYLKYKIFEKTFIPIAFQYLKLVSSNLDSIEQQQQQQQQQQQQ
QQQHLKVYDLLLRVNGGKGGFGSLLKSSGTKVGQKKTTNFDACRDLSGRRLRHVNNEARI
KQWLEDEEARKIAMQELKKKFNDSNDKHVEEFNDTQFQKETEDIHKKVSNSVEQGLKLQK
ENKNLENNKTTTTTTTTTTTTTATTPKTVDRFKKPSNNNTKPISMFVPDFDDDDEEEEEE
ESEEEKKDSIKTKVSKTK*slke*kkkkkkkkkknnkiksnvyicqffli


Frame C:
mkel*ilk*riknpfvkni*nirflkrhlfq*hfni*n*chqi*iv*nnnsnnnsnnnnn
nnni*kfmiyyyv*mvvkvvlvhy*nlqvqklvkrkqpismhvei*vved*dm*imklel
nng*kmkklerlqckn*krnlmiqminmlknlmihnfkkklkiyikkfqillnkv*nykk
kiki*ktikllpppqlplllqlplhqkqlidlknhqiiirnqfqclfqismmmmkkkkkr
kvrkrkkiqlkqkfqrlnnh*rsekkkkkkkkkriik*nlmcifvnff*y


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM187 (SSM187Q) /CSM/SS/SSM1-D/SSM187Q.Seq.d/ 662 0.0
SSM617 (SSM617Q) /CSM/SS/SSM6-A/SSM617Q.Seq.d/ 54 4e-06
SLK612 (SLK612Q) /CSM/SL/SLK6-A/SLK612Q.Seq.d/ 50 6e-05
CHI439 (CHI439Q) /CSM/CH/CHI4-B/CHI439Q.Seq.d/ 50 6e-05
AHB634 (AHB634Q) /CSM/AH/AHB6-B/AHB634Q.Seq.d/ 50 6e-05
VSH174 (VSH174Q) /CSM/VS/VSH1-D/VSH174Q.Seq.d/ 48 2e-04
SLB353 (SLB353Q) /CSM/SL/SLB3-C/SLB353Q.Seq.d/ 48 2e-04
SFC506 (SFC506Q) /CSM/SF/SFC5-A/SFC506Q.Seq.d/ 48 2e-04
FC-BH14 (FC-BH14Q) /CSM/FC/FC-BH/FC-BH14Q.Seq.d/ 46 9e-04
VHO680 (VHO680Q) /CSM/VH/VHO6-D/VHO680Q.Seq.d/ 44 0.004

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 662 0.0 13
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 2e-15 21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 46 2e-15 20
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 44 2e-13 15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 2e-11 22
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 38 6e-11 19
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 44 9e-11 21
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 36 1e-10 23
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 40 3e-10 17
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 44 5e-10 15
dna update 2004. 1.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116551_38(AC116551|pid:none) Dictyostelium discoideum chromoso... 325 1e-87
FJ362589_1(FJ362589|pid:none) Vernicia fordii clone vf3-52 ubiqu... 74 6e-12
EF085136_1(EF085136|pid:none) Picea sitchensis clone WS0285_G19 ... 71 4e-11
BT034028_1(BT034028|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
EU960641_1(EU960641|pid:none) Zea mays clone 226914 unknown mRNA. 66 2e-09
BT036780_1(BT036780|pid:none) Zea mays full-length cDNA clone ZM... 66 2e-09
AE014297_3589(AE014297|pid:none) Drosophila melanogaster chromos... 65 3e-09
BT081189_1(BT081189|pid:none) Caligus clemensi clone ccle-evs-51... 65 3e-09
CP001577_187(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 63 1e-08
BT077824_1(BT077824|pid:none) Lepeophtheirus salmonis Pacific fo... 62 2e-08
protein update 2009. 7. 9
PSORT

psg: 0.47 gvh: 0.49 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SSM187 is cyt

5' end seq. ID SSM187F
5' end seq.
>SSM187F.Seq
AAATGAAAGAATTATAAATTTTAAAATAAAGGATAAAGAATCCTTTTGTGAAGAATATTT
AAAATATAAGATTTTTGAAAAGACATTTATTCCAATAGCATTTCAATATTTAAAATTAGT
GTCATCAAATTTAGATAGTATAGAACAACAACAGCAACAACAACAGCAACAACAACAACA
ACAACAACAACATTTAAAAGTTTATGATTTATTATTACGTGTAAATGGTGGTAAAGGTGG
TTTTGGTTCATTATTGAAATCTTCAGGTACAAAAGTTGGTCAAAAGAAAACAACCAATTT
CGATGCATGTAGAGATTTAAGTGGTAGAAGATTAAGACATGTAAATAATGAAGCTAGAAT
TAAACAATGGTTAGAAGATGAAGAAGCTAG----------
Length of 5' end seq. 390
3' end seq. ID SSM187Z
3' end seq.
>SSM187Z.Seq
----------CCAATTTCGATGCATGTAGAGATTTAAGTGGTAGAAGATTAAGACATGTA
AATAATGAAGCTAGAATTAAACAATGGTTAGAAGATGAAGAAGCTAGAAAGATTGCAATG
CAAGAATTAAAAAAGAAATTTAATGATTCAAATGATAAACATGTTGAAGAATTTAATGAT
ACACAATTTCAAAAAGAAACTGAAGATATACATAAAAAAGTTTCAAATTCTGTTGAACAA
GGTTTAAAATTACAAAAAGAAAATAAAAATTTAGAAAACAATAAAACTACTACCACCACC
ACAACTACCACTACTACTACAACTGCCACTACACCAAAAACAGTTGATAGATTTAAAAAA
CCATCAAATAATAATACGAAACCAATTTCAATGTTTGTTCCAGATTTCGATGATGATGAT
GAAGAAGAAGAAGAAGAGGAAAGTGAGGAAGAGAAAAAAGATTCAATTAAAACAAAAGTT
TCAAAGACTAAATAATCATTAAAGGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
AATAATAAAATAAAATCTAATGTGTATATTTGTCAATTTTTTTTAATAT
Length of 3' end seq. 579
Connected seq. ID SSM187P
Connected seq.
>SSM187P.Seq
AAATGAAAGAATTATAAATTTTAAAATAAAGGATAAAGAATCCTTTTGTGAAGAATATTT
AAAATATAAGATTTTTGAAAAGACATTTATTCCAATAGCATTTCAATATTTAAAATTAGT
GTCATCAAATTTAGATAGTATAGAACAACAACAGCAACAACAACAGCAACAACAACAACA
ACAACAACAACATTTAAAAGTTTATGATTTATTATTACGTGTAAATGGTGGTAAAGGTGG
TTTTGGTTCATTATTGAAATCTTCAGGTACAAAAGTTGGTCAAAAGAAAACAACCAATTT
CGATGCATGTAGAGATTTAAGTGGTAGAAGATTAAGACATGTAAATAATGAAGCTAGAAT
TAAACAATGGTTAGAAGATGAAGAAGCTAG----------CCAATTTCGATGCATGTAGA
GATTTAAGTGGTAGAAGATTAAGACATGTAAATAATGAAGCTAGAATTAAACAATGGTTA
GAAGATGAAGAAGCTAGAAAGATTGCAATGCAAGAATTAAAAAAGAAATTTAATGATTCA
AATGATAAACATGTTGAAGAATTTAATGATACACAATTTCAAAAAGAAACTGAAGATATA
CATAAAAAAGTTTCAAATTCTGTTGAACAAGGTTTAAAATTACAAAAAGAAAATAAAAAT
TTAGAAAACAATAAAACTACTACCACCACCACAACTACCACTACTACTACAACTGCCACT
ACACCAAAAACAGTTGATAGATTTAAAAAACCATCAAATAATAATACGAAACCAATTTCA
ATGTTTGTTCCAGATTTCGATGATGATGATGAAGAAGAAGAAGAAGAGGAAAGTGAGGAA
GAGAAAAAAGATTCAATTAAAACAAAAGTTTCAAAGACTAAATAATCATTAAAGGAGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAATAAAATAAAATCTAATGTGTATATT
TGTCAATTTTTTTTAATAT
Length of connected seq. 969
Full length Seq ID SSM187E
Full length Seq.
>SSM187E.Seq
AAATGAAAGAATTATAAATTTTAAAATAAAGGATAAAGAATCCTTTTGTGAAGAATATTT
AAAATATAAGATTTTTGAAAAGACATTTATTCCAATAGCATTTCAATATTTAAAATTAGT
GTCATCAAATTTAGATAGTATAGAACAACAACAGCAACAACAACAGCAACAACAACAACA
ACAACAACAACATTTAAAAGTTTATGATTTATTATTACGTGTAAATGGTGGTAAAGGTGG
TTTTGGTTCATTATTGAAATCTTCAGGTACAAAAGTTGGTCAAAAGAAAACAACCAATTT
CGATGCATGTAGAGATTTAAGTGGTAGAAGATTAAGACATGTAAATAATGAAGCTAGAAT
TAAACAATGGTTAGAAGATGAAGAAGCTAGAAAGATTGCAATGCAAGAATTAAAAAAGAA
ATTTAATGATTCAAATGATAAACATGTTGAAGAATTTAATGATACACAATTTCAAAAAGA
AACTGAAGATATACATAAAAAAGTTTCAAATTCTGTTGAACAAGGTTTAAAATTACAAAA
AGAAAATAAAAATTTAGAAAACAATAAAACTACTACCACCACCACAACTACCACTACTAC
TACAACTGCCACTACACCAAAAACAGTTGATAGATTTAAAAAACCATCAAATAATAATAC
GAAACCAATTTCAATGTTTGTTCCAGATTTCGATGATGATGATGAAGAAGAAGAAGAAGA
GGAAAGTGAGGAAGAGAAAAAAGATTCAATTAAAACAAAAGTTTCAAAGACTAAATAATC
ATTAAAGGAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAATAAAATAAAATC
TAATGTGTATATTTGTCAATTTTTTTTAATAT
Length of full length seq. 872