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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM176
Library SS
(Link to library)
Clone ID SSM176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSM176Z
(Link to Original site)
Representative DNA sequence 
>SSM176 (SSM176Q) /CSM/SS/SSM1-D/SSM176Q.Seq.d/
XXXXXXXXXXCATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATT
TTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAG
TTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTC
TGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTC
TGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAA
AAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATGACATATAATAA
AAAATAAAAAATAAACAAAAA
sequence update 1998. 2.28
Translated Amino Acid sequence 
---EFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSA
YLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk
*kink
Translated Amino Acid sequence (All Frames) 
Frame A:
---mnlmfkllstnklnnhfykmvhhh*iqpankvvdqvvqdqmnqlnnislmllvqsfl
li*lsqsy*pfyslvfvvfliskfqidtkhqrakyfkkkkiikn*yqiiyktnki*hiik
nkk*tk


Frame B:
---*i*cssyfqqts*tiiftrwfiiikfsqptr*wik*frik*tn*ttfhlcywsspfc
lfdylnlishfihwyllyf*spssr*irstkeqstlkkkk**kintk*fikqikydi**k
iknkqk


Frame C:
---EFDVQATFNKQVEQSFLQDGSSSLNSASQQGSGSSSSGSNEPTKQHFTYVTGPVLSA
YLIISILLAILFTGICCISDLQVPDRYEAPKSKVL*kkknnkklipnnl*nk*nmtynkk
*kink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM176 (SSM176Q) /CSM/SS/SSM1-D/SSM176Q.Seq.d/                        555   e-157
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        555   e-157
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                        555   e-157
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        555   e-157
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        555   e-157
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        555   e-157
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        555   e-157
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        555   e-157
SSJ466 (SSJ466Q) /CSM/SS/SSJ4-C/SSJ466Q.Seq.d/                        555   e-157
SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/                        555   e-157
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   505  e-142  2
AC111943|AC111943.4 Rattus norvegicus clone CH230-207F15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.31  1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.31  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.31  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.31  1
AC115411|AC115411.4 Rattus norvegicus clone CH230-207J17, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46  0.31  1
AC133735|AC133735.2 Rattus norvegicus clone CH230-162F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.2  1
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  1.2  1
AC145050|AC145050.2 Canis familiaris clone RP81-336C20, WORKING DRAFT SEQUENCE, 6 ordered pieces.    32  1.8  7
BZ252785|BZ252785.1 CH230-402I17.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-402I17, DNA sequence.    40  3.0  2
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   102   3e-21
protein update 2009. 2. 3
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSM176 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM176Z
3' end seq. 
>SSM176Z.Seq
----------CATGAATTTGATGTTCAAGCTACTTTCAACAAACAAGTTGAACAATCATT
TTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGGTAGTGGATCAAGTAG
TTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTACTGGTCCAGTCCTTTC
TGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGGTATTTGTTGTATTTC
TGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGTACTTTAAAAAAAAAA
AAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAATATGACATATAATAA
AAAATAAAAAATAAACAAAAA
Length of 3' end seq. 371
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -