SSM169
Library SS
(Link to library)
Clone ID SSM169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10114-1
Original site URL
Representative seq. ID SSM169Z
(Link to Original site)
Representative DNA sequence
>SSM169 (SSM169Q) /CSM/SS/SSM1-C/SSM169Q.Seq.d/
XXXXXXXXXXTAAAAAAATAAATAAATTAAATCCAATGAAAAAATCAATAATAATTATTT
TTACAATTTTAATAATATTTTTAATAAATAGTTGTATTTCACAAGAGACAGAACAACCAC
AACAAACTCAACAACCAAATAATAGACCAAGTTTAAAAGATGAAAGTTTAATACAACAAT
TAGATACAAATAATATTGATCGTATTTTAAATCATGGTAATAGTGTTTGGTTATTAAAAT
TCTATGCTCCATGGTGTAAACATAGTCAAGAGTTTCAAAAAACCTTTGTAGAAATGTCAC
ATTTATTAAAGGATCATTTAAGTTTTGGTTCAGTAGATTGTATCAATGATCCAATGTTAT
TACACCGTTTTGAAATTACTGCATACCCAACATTGAAATTCTTATACAATGGTCAGTTAT
TTGAATTCCAAGGAGAGAGAACCATTGAACATATAGTTCAATTCTTGCAAGCTGGTTATA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAAAGAAACAACAA
sequence update 1998. 2.28
Translated Amino Acid sequence
---KKINKLNPMKKSIIIIFTILIIFLINSCISQETEQPQQTQQPNNRPSLKDESLIQQL
DTNNIDRILNHGNSVWLLKFYAPWCKHSQEFQKTFVEMSHLLKDHLSFGSVDCINDPMLL
HRFEITAYPTLKFLYNGQLFEFQGERTIEHIVQFLQAGYKDVVAMPYPLIDQQEILKRQL
ELQYSREGMSQEQIDQMEKQIKKKQQ


Translated Amino Acid sequence (All Frames)
Frame A:
---KKINKLNPMKKSIIIIFTILIIFLINSCISQETEQPQQTQQPNNRPSLKDESLIQQL
DTNNIDRILNHGNSVWLLKFYAPWCKHSQEFQKTFVEMSHLLKDHLSFGSVDCINDPMLL
HRFEITAYPTLKFLYNGQLFEFQGERTIEHIVQFLQAGYKDVVAMPYPLIDQQEILKRQL
ELQYSREGMSQEQIDQMEKQIKKKQQ


Frame B:
---kk*in*iq*knq**lflqf**yf**ivvfhkrqnnhnklnnqiidqv*kmkv*ynn*
iqiilivf*imvivfgy*nsmlhgvnivksfkkpl*kchiy*rii*vlvq*ivsmiqcyy
tvlkllhtqh*nsytmvsylnskereplni*fnscklvikmwwlclih*linkrs*rdnw
nfnilvkvchknklikwknklkrnn


Frame C:
---knk*iksnekinnnyfynfnnifnk*lyftrdrttttnsttk**tkfkr*kfnttir
yk*y*syfksw**clvikilcsmv*t*srvsknlcrnvtfikgsfkfwfsrlyq*snvit
pf*nycipnieiliqwsvi*iprrenh*tyssilaswl*rcggyalsid*strdlketig
tsifs*ryvtrtn*sngktn*kett


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM169 (SSM169Q) /CSM/SS/SSM1-C/SSM169Q.Seq.d/ 1051 0.0
SSD473 (SSD473Q) /CSM/SS/SSD4-D/SSD473Q.Seq.d/ 777 0.0
SSK234 (SSK234Q) /CSM/SS/SSK2-B/SSK234Q.Seq.d/ 618 e-176
SSD470 (SSD470Q) /CSM/SS/SSD4-C/SSD470Q.Seq.d/ 490 e-137
SSL661 (SSL661Q) /CSM/SS/SSL6-C/SSL661Q.Seq.d/ 440 e-122
SFH833 (SFH833Q) /CSM/SF/SFH8-B/SFH833Q.Seq.d/ 406 e-112
SSM715 (SSM715Q) /CSM/SS/SSM7-A/SSM715Q.Seq.d/ 347 1e-94
VSJ102 (VSJ102Q) /CSM/VS/VSJ1-A/VSJ102Q.Seq.d/ 44 0.003
VHO437 (VHO437Q) /CSM/VH/VHO4-B/VHO437Q.Seq.d/ 44 0.003
VHH363 (VHH363Q) /CSM/VH/VHH3-C/VHH363Q.Seq.d/ 44 0.003

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 1043 0.0 1
AC099560|AC099560.2 Homo sapiens chromosome 3 clone RP11-761N21, complete sequence. 50 0.002 2
AC116441|AC116441.2 Homo sapiens chromosome 3 clone RP11-20O23, complete sequence. 50 0.033 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.045 9
AC103568|AC103568.7 Rattus norvegicus clone CH230-2N15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.21 5
AC091458|AC091458.2 Mus musculus clone RP23-68M8, WORKING DRAFT SEQUENCE, 21 unordered pieces. 46 0.51 1
AL534180|AL534180.2 human full-length cDNA 5-PRIME end of clone CS0DF005YL06 of FETAL BRAIN of Homo sapiens (human). 46 0.51 1
BX340584|BX340584.1 human full-length cDNA 5-PRIME end of clone CS0DJ003YO15 of T CELLS (JURKAT CELL LINE) COT 10-NORMALIZED of Homo sapiens (human). 46 0.51 1
BE911363|BE911363.1 601662806F1 NCI_CGAP_Mam1 Mus musculus cDNA clone IMAGE:3963025 5', mRNA sequence. 38 0.57 3
AF310884|AF310884.1 Dictyostelium discoideum Rac1B (rac1B) gene, complete cds; racK pseudogene, complete sequence; and unknown genes. 38 0.60 3
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC063992_1(BC063992|pid:none) Danio rerio thioredoxin domain con... 75 1e-12
AB171581_1(AB171581|pid:none) Macaca fascicularis brain cDNA clo... 75 2e-12
AK028292_1(AK028292|pid:none) Mus musculus 14, 17 days embryo he... 74 3e-12
AB011145_1(AB011145|pid:none) Homo sapiens mRNA for KIAA0573 pro... 74 3e-12
(P13667) RecName: Full=Protein disulfide-isomerase A4; ... 74 3e-12
S06318(S06318) endoplasmic reticulum protein ERp72 homolog - mou... 74 3e-12
M86870_1(M86870|pid:none) Rattus norvegicus calcium-binding prot... 74 3e-12
(Q9BS26) RecName: Full=Endoplasmic reticulum resident protein ER... 74 3e-12
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet... 74 4e-12
(Q3T0L2) RecName: Full=Endoplasmic reticulum resident protein ER... 73 6e-12
protein update 2009. 6.15
PSORT

psg: 1.00 gvh: 0.64 alm: 0.13 top: 0.07 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: mitochondrial
20.0 %: Golgi
16.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for SSM169 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM169Z
3' end seq.
>SSM169Z.Seq
----------TAAAAAAATAAATAAATTAAATCCAATGAAAAAATCAATAATAATTATTT
TTACAATTTTAATAATATTTTTAATAAATAGTTGTATTTCACAAGAGACAGAACAACCAC
AACAAACTCAACAACCAAATAATAGACCAAGTTTAAAAGATGAAAGTTTAATACAACAAT
TAGATACAAATAATATTGATCGTATTTTAAATCATGGTAATAGTGTTTGGTTATTAAAAT
TCTATGCTCCATGGTGTAAACATAGTCAAGAGTTTCAAAAAACCTTTGTAGAAATGTCAC
ATTTATTAAAGGATCATTTAAGTTTTGGTTCAGTAGATTGTATCAATGATCCAATGTTAT
TACACCGTTTTGAAATTACTGCATACCCAACATTGAAATTCTTATACAATGGTCAGTTAT
TTGAATTCCAAGGAGAGAGAACCATTGAACATATAGTTCAATTCTTGCAAGCTGGTTATA
AAGATGTGGTGGCTATGCCTTATCCATTGATTGATCAACAAGAGATCTTAAAGAGACAAT
TGGAACTTCAATATTCTCGTGAAGGTATGTCACAAGAACAAATTGATCAAATGGAAAAAC
AAATTAAAAAGAAACAACAA
Length of 3' end seq. 610
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -