SSM162
Library SS
(Link to library)
Clone ID SSM162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14087-1
Original site URL
Representative seq. ID SSM162Z
(Link to Original site)
Representative DNA sequence
>SSM162 (SSM162Q) /CSM/SS/SSM1-C/SSM162Q.Seq.d/
XXXXXXXXXXTCAAGAAGGAGATTTCAAAATCGTTCAAACTCCTGCAATAATTGATTACA
TTTCAGAGAAACATGATTTTCGTGGTAAAACCAAGGAGGAAAGAGCAAGAGCTCATCAAT
GTTTAGCAGGTATAATGGAAGTTTTGGACCATTGTTTGGGATATTCATTTAAAATGGATA
AACAACAACAAGAAAAATTCAGAAATGAAAGTCCAATAAAGAAATTTTTTGAAGGTTTTG
AAATGGTACTTTCTCAAAATAAATATTTGGCATCTGGTGAAAAAGAAACTTATGTTGATC
TTATGGCATTTGTAATGGTTGACTATGTCACTAATTTGGGTCTTATGCCAAGTGGTGATT
ATCCTAAACTAATCTCTTTGAAAAAACATTATGAATCATCACCACAACTTAAAAAATATT
TGGAATCAAGACCACAATCTAATTTCTAGAATATTCCTCAATTTTTTATTAATTTTTAAT
TTTAATTATTAAATAAAAAAAGAATAAAATAAAACTAAATAGCATTCAATGATGATGATA
ATAATAAAAAAAAAAAAAAAA
sequence update 1998. 2.28
Translated Amino Acid sequence
---QEGDFKIVQTPAIIDYISEKHDFRGKTKEERARAHQCLAGIMEVLDHCLGYSFKMDK
QQQEKFRNESPIKKFFEGFEMVLSQNKYLASGEKETYVDLMAFVMVDYVTNLGLMPSGDY
PKLISLKKHYESSPQLKKYLESRPQSNF*nipqffinf*f*llnkkrik*n*iafndddn
nkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---QEGDFKIVQTPAIIDYISEKHDFRGKTKEERARAHQCLAGIMEVLDHCLGYSFKMDK
QQQEKFRNESPIKKFFEGFEMVLSQNKYLASGEKETYVDLMAFVMVDYVTNLGLMPSGDY
PKLISLKKHYESSPQLKKYLESRPQSNF*nipqffinf*f*llnkkrik*n*iafndddn
nkkkkk


Frame B:
---kkeisksfkllq*litfqrnmifvvkprrkeqelinv*qv*wkfwtivwdihlkwin
nnkknsemkvq*rnflkvlkwyflkiniwhlvkkklmlilwhl*wltmsliwvlcqvvii
ln*sl*knimnhhhnlkniwnqdhnlisriflnfllifnfny*ikke*nktk*hsmmmii
ikkkkk


Frame C:
---rrrfqnrsnscnn*lhfret*fsw*nqggksksssmfsryngsfgplfgifi*ng*t
ttrkiqk*ksnkeif*rf*ngtfsk*ifgiw*krnlc*sygicng*lch*fgsyakw*ls
*tnlfektl*iittt*kifgiktti*fleyssify*fliliik*kknkiklnsiq*****
*kkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM162 (SSM162Q) /CSM/SS/SSM1-C/SSM162Q.Seq.d/ 890 0.0
SSL157 (SSL157Q) /CSM/SS/SSL1-C/SSL157Q.Seq.d/ 874 0.0
SSK769 (SSK769Q) /CSM/SS/SSK7-C/SSK769Q.Seq.d/ 874 0.0
SSJ566 (SSJ566Q) /CSM/SS/SSJ5-C/SSJ566Q.Seq.d/ 874 0.0
SSI234 (SSI234Q) /CSM/SS/SSI2-B/SSI234Q.Seq.d/ 874 0.0
SSE684 (SSE684Q) /CSM/SS/SSE6-D/SSE684Q.Seq.d/ 874 0.0
SSC810 (SSC810Q) /CSM/SS/SSC8-A/SSC810Q.Seq.d/ 874 0.0
AHI677 (AHI677Q) /CSM/AH/AHI6-D/AHI677Q.Seq.d/ 874 0.0
SSC147 (SSC147Q) /CSM/SS/SSC1-B/SSC147Q.Seq.d/ 870 0.0
SSH606 (SSH606Q) /CSM/SS/SSH6-A/SSH606Q.Seq.d/ 866 0.0

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Z69678|Z69678.1 D.schiavazzii satellite DNA (clone bdopvu2). 48 0.12 1
Z69669|Z69669.1 D.schiavazzii satellite DNA (clone vetpvu1). 48 0.12 1
AF020713|AF020713.1 Bacteriophage SPBc2 complete genome. 38 0.12 4
AC000374|AC000374.1 Human cosmid g1980a170, complete sequence. 38 0.22 3
AC137820|AC137820.11 Medicago truncatula clone mth2-15f9, complete sequence. 48 0.23 2
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 36 0.35 6
BX200257|BX200257.1 Danio rerio genomic clone DKEY-209P1, genomic survey sequence. 30 0.38 3
BX207797|BX207797.1 Danio rerio genomic clone DKEY-259J9, genomic survey sequence. 30 0.38 3
AC144371|AC144371.2 Felis catus clone RP86-182D16, WORKING DRAFT SEQUENCE, 9 ordered pieces. 42 0.43 5
AC034161|AC034161.3 Homo sapiens chromosome 11 clone RP11-397J5, WORKING DRAFT SEQUENCE, 18 unordered pieces. 34 0.46 6
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QV7) RecName: Full=Putative glutathione S-transferase alpha-... 286 3e-76
(Q55FF3) RecName: Full=Putative glutathione S-transferase alpha-... 83 6e-15
(Q54VI4) RecName: Full=Putative glutathione S-transferase alpha-... 82 1e-14
(Q86AU1) RecName: Full=Putative glutathione S-transferase alpha-... 81 2e-14
FN357554_38(FN357554|pid:none) Schistosoma mansoni genome sequen... 70 4e-11
(P15964) RecName: Full=Glutathione S-transferase class-mu 26 kDa... 70 4e-11
EU518245_1(EU518245|pid:none) Thais clavigera glutathione S-tran... 66 5e-10
U13853_1(U13853|pid:none) pGEX-4T1 cloning vector, complete sequ... 65 2e-09
U85201_1(U85201|pid:none) Expression vector pGH/F2.2-163, comple... 65 2e-09
FJ526990_1(FJ526990|pid:none) Cloning vector pEG(KT), complete s... 65 2e-09
protein update 2009. 6.15
PSORT

psg: 0.75 gvh: 0.36 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSM162 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM162Z
3' end seq.
>SSM162Z.Seq
----------TCAAGAAGGAGATTTCAAAATCGTTCAAACTCCTGCAATAATTGATTACA
TTTCAGAGAAACATGATTTTCGTGGTAAAACCAAGGAGGAAAGAGCAAGAGCTCATCAAT
GTTTAGCAGGTATAATGGAAGTTTTGGACCATTGTTTGGGATATTCATTTAAAATGGATA
AACAACAACAAGAAAAATTCAGAAATGAAAGTCCAATAAAGAAATTTTTTGAAGGTTTTG
AAATGGTACTTTCTCAAAATAAATATTTGGCATCTGGTGAAAAAGAAACTTATGTTGATC
TTATGGCATTTGTAATGGTTGACTATGTCACTAATTTGGGTCTTATGCCAAGTGGTGATT
ATCCTAAACTAATCTCTTTGAAAAAACATTATGAATCATCACCACAACTTAAAAAATATT
TGGAATCAAGACCACAATCTAATTTCTAGAATATTCCTCAATTTTTTATTAATTTTTAAT
TTTAATTATTAAATAAAAAAAGAATAAAATAAAACTAAATAGCATTCAATGATGATGATA
ATAATAAAAAAAAAAAAAAAA
Length of 3' end seq. 551
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -