>SSM136 (SSM136Q) /CSM/SS/SSM1-B/SSM136Q.Seq.d/
XXXXXXXXXXTCAATTAAGTACTTTACAAGAGATTATGTATTTCAATGATACAAAGCCAT
TTGCAACTATTGATGCATCTGCTCAAACAATTCAAGATCGTGTAAAATCTCATTTGGCAA
GAGATTTATATGAATATGGTATTGAATTAGCTCGTCTTCAAATTGAAACAATAAAAGTTT
TGGATACCGAAATCGCTAAAAAACTTGCTGGTCAATCAGTTACATCTGCTGAATTCACAA
CCAAACAAGCAACGCTTGTAAAAGAATATGATATCAAAACCACTGAAGCTCGTCTTAAAG
CTGAAACCGATAATATTGCATTAGAACAAAAAGGTATAGCAATTATTGCAGAAGCTCAAG
CAAAATTAGAATCTGCTAAAAAACAAGCTGAAGCTTTACTTGTTACAGCTAATGCTCAAA
AGAAAGTTCAGGAAATACAAGGTGAATTATATTCCAAATTCCCGATTCTCGCTGAAATTG
AATTGGCTAAAATTAAATCCGAAGCTTTAAAAAGTTCAACACTTTATATTACTCCTCAAG
ATGCTGGTAACTTTATGAATTCACCATTCTTTTTCATGGAAAGAATGCTTGGAAAACAAC
AAACCAACATTAAAAGTTAAAATATTTCAATAGTATAACATATAAAAAAA

---QLSTLQEIMYFNDTKPFATIDASAQTIQDRVKSHLARDLYEYGIELARLQIETIKVL
DTEIAKKLAGQSVTSAEFTTKQATLVKEYDIKTTEARLKAETDNIALEQKGIAIIAEAQA
KLESAKKQAEALLVTANAQKKVQEIQGELYSKFPILAEIELAKIKSEALKSSTLYITPQD
AGNFMNSPFFFMERMLGKQQTNIKS*nisiv*hikk

Frame A:
---QLSTLQEIMYFNDTKPFATIDASAQTIQDRVKSHLARDLYEYGIELARLQIETIKVL
DTEIAKKLAGQSVTSAEFTTKQATLVKEYDIKTTEARLKAETDNIALEQKGIAIIAEAQA
KLESAKKQAEALLVTANAQKKVQEIQGELYSKFPILAEIELAKIKSEALKSSTLYITPQD
AGNFMNSPFFFMERMLGKQQTNIKS*nisiv*hikk


Frame B:
---n*vlykrlcismiqshlqllmhllkqfkiv*nliwqeiymnmvln*lvfklkq*kfw
ipkslknllvnqlhllnsqpnkqrl*knmiskplklvlklkpiilh*nkkv*qllqklkq
n*nllknklklyllqlmlkrkfrkykvnyipnsrfslklnwlklnpkl*kvqhfilllkm
lvtl*ihhsfswkeclennkptlkvkifq*yni*k


Frame C:
---ikyftrdyvfq*ykaicny*cicsnnsrsckisfgkrfi*iwy*issssn*nnksfg
yrnr*ktcwsisyic*ihnqtsnackri*yqnh*sss*s*nr*ycirtkrysnycrsssk
iric*kts*sftcys*cskessgntr*iifqipdsr*n*ig*n*irsfkkfntlyyssrc
w*lyeftilfhgknawkttnqh*klkyfnsitykk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM136 (SSM136Q) /CSM/SS/SSM1-B/SSM136Q.Seq.d/                       1255   0.0
SSK123 (SSK123Q) /CSM/SS/SSK1-A/SSK123Q.Seq.d/                       1221   0.0
SSM704 (SSM704Q) /CSM/SS/SSM7-A/SSM704Q.Seq.d/                       1065   0.0
SSD350 (SSD350Q) /CSM/SS/SSD3-C/SSD350Q.Seq.d/                       1001   0.0
SSL779 (SSL779Q) /CSM/SS/SSL7-D/SSL779Q.Seq.d/                        922   0.0
AFM543 (AFM543Q) /CSM/AF/AFM5-B/AFM543Q.Seq.d/                        569   e-161
SLE173 (SLE173Q) /CSM/SL/SLE1-D/SLE173Q.Seq.d/                        224   1e-57
VHM373 (VHM373Q) /CSM/VH/VHM3-D/VHM373Q.Seq.d/                        202   5e-51
SFJ283 (SFJ283Q) /CSM/SF/SFJ2-D/SFJ283Q.Seq.d/                        202   5e-51
SFB121 (SFB121Q) /CSM/SF/SFB1-A/SFB121Q.Seq.d/                        202   5e-51

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF014050|AF014050.1 Dictyostelium discoideum vacuolin B (vac B) mRNA, complete cds.   741  0.0  2
AF014049|AF014049.1 Dictyostelium discoideum vacuolin A (vac A) mRNA, complete cds.   174  1e-58  4
AV028418|AV028418.1 Mus musculus adult male brain cDNA, partial sequence, clone 1422000G15.    44  0.076  2
AP003700|AP003700.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_H02.    48  0.14  1
AP005895|AP005895.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13.    48  0.17  4
AC079038|AC079038.3 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence.    48  0.19  4
AX356425|AX356425.1 Sequence 59 from Patent WO0181622.            46  0.33  2
AX346408|AX346408.1 Sequence 1479 from Patent WO0200928.          46  0.33  2
AX251239|AX251239.1 Sequence 207 from Patent WO0168912.           46  0.33  2
BG526078|BG526078.1 55-34 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    36  0.42  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WZ3) RecName: Full=Vacuolin-C;                                    379   e-104
(Q54WZ2) RecName: Full=Vacuolin-B;                                    322   8e-87
AF014050_1(AF014050|pid:none) Dictyostelium discoideum vacuolin ...   322   8e-87
CP000804_555(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    45   0.002
U19769_1(U19769|pid:none) Human CENP-F kinetochore protein mRNA,...    44   0.003
(P49454) RecName: Full=Centromere protein F; AltName: Full=Kinet...    44   0.003
PC4035(PC4035) cell-cycle-dependent 350K nuclear protein - human...    44   0.003
U30872_1(U30872|pid:none) Human mitosin mRNA, complete cds.            44   0.003
AF118076_1(AF118076|pid:none) Homo sapiens PRO1779 mRNA, complet...    44   0.005
CR954203_320(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    44   0.005

 psg: 0.75  gvh: 0.36  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSM136 is cyt

>SSM136Z.Seq
----------TCAATTAAGTACTTTACAAGAGATTATGTATTTCAATGATACAAAGCCAT
TTGCAACTATTGATGCATCTGCTCAAACAATTCAAGATCGTGTAAAATCTCATTTGGCAA
GAGATTTATATGAATATGGTATTGAATTAGCTCGTCTTCAAATTGAAACAATAAAAGTTT
TGGATACCGAAATCGCTAAAAAACTTGCTGGTCAATCAGTTACATCTGCTGAATTCACAA
CCAAACAAGCAACGCTTGTAAAAGAATATGATATCAAAACCACTGAAGCTCGTCTTAAAG
CTGAAACCGATAATATTGCATTAGAACAAAAAGGTATAGCAATTATTGCAGAAGCTCAAG
CAAAATTAGAATCTGCTAAAAAACAAGCTGAAGCTTTACTTGTTACAGCTAATGCTCAAA
AGAAAGTTCAGGAAATACAAGGTGAATTATATTCCAAATTCCCGATTCTCGCTGAAATTG
AATTGGCTAAAATTAAATCCGAAGCTTTAAAAAGTTCAACACTTTATATTACTCCTCAAG
ATGCTGGTAACTTTATGAATTCACCATTCTTTTTCATGGAAAGAATGCTTGGAAAACAAC
AAACCAACATTAAAAGTTAAAATATTTCAATAGTATAACATATAAAAAAA