>SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/
XXXXXXXXXXTTTAAATACATCATTATTGGTGATATGGGTGTAGGTAAATCATGTCTCCT
TCACCAATTCACTGAAAATAAATTCGTCCCAGATTCACCACATACAATTGGTGTAGAGTT
TGGTACAAGAATTGTAGATGTAAATAATAAAAAAATTAAATTACAAATTTGGGATACTGC
AGGTCAAGAAAGATTCAGGGCAGTTACACGTTCATATTATAGAGGTGCAGCAGGTGCATT
ATTAGTTTATGATATTACAAGAAGAATTACATACAACCACTTAACCACTTGGTTAACTGA
TGCTAGAAATCTTACTAATCCAAACACTGTCATCATGTTAATTGGTAACAAAAAAGATTT
GGAAGGTCAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTT
AATTTTTGTGGAATCTAGTGCAAAAACTGGTGAGAATGTAGAAGAAGCTTTCTTAAGAAC
TGCTAAATTAATTTTCCAAAGCGTTCAAGAGGGTAATGTTGATCTCATCCCGGATGGAGG
TATTACCAAGAACCCACCACAAACCATCACTGATAAACCTCAAGATGCCAGTAAATGTTC
TTGTTAATAAAATTTTAAAG

---KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAG
QERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLE
GQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPDGGI
TKNPPQTITDKPQDASKCSC**nfk

Frame A:
---lntsllviwv*vnhvsftnslkinssqihhiqlv*slvqel*m*iikklnykfgilq
vkkdsgqlhvhiievqqvhy*fmilqeelhttt*plg*lmleilliqtlssc*lvtkkiw
kvkemspmkrllllqnkmv*flwnlvqklvrm*kkls*elln*fskafkrvmlissrmev
lprthhkpslinlkmpvnvlvnkilk


Frame B:
---*ihhyw*ygcr*imspspih*k*irprfttynwcrvwykncrck**kn*itnlgycr
srkiqgsytfil*rcsrciisl*yykknyiqplnhlvn*c*ksy*skhchhvnw*qkrfg
rskrchl*rgfcfcktkwfnfcgi*cknw*ecrrsflknc*infpkrsrg*c*shpgwry
yqepttnhh**tsrcq*mfllikf*


Frame C:
---KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAG
QERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLE
GQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPDGGI
TKNPPQTITDKPQDASKCSC**nfk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                       1168   0.0
SSF373 (SSF373Q) /CSM/SS/SSF3-D/SSF373Q.Seq.d/                       1166   0.0
SSK429 (SSK429Q) /CSM/SS/SSK4-B/SSK429Q.Seq.d/                       1160   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                       1130   0.0
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                       1126   0.0
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                       1118   0.0
VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                        922   0.0
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                        922   0.0
SSF727 (SSF727Q) /CSM/SS/SSF7-B/SSF727Q.Seq.d/                        922   0.0
VSC667 (VSC667Q) /CSM/VS/VSC6-C/VSC667Q.Seq.d/                        894   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U02927|U02927.1 Dictyostelium discoideum Ax3 Rab4 mRNA, complete cds.   837  0.0  3
BI394576| (AL162081) hypothetical protein [Ho, mRNA sequence.    68  2e-23  4
AJ447472|AJ447472.1 Gallus gallus EST, clone library riken1, clone 16l20r1.    68  3e-23  4
AJ448404|AJ448404.1 Gallus gallus EST, clone library riken1, clone 19m10r1.    68  4e-23  4
BU230962|BU230962.1 603399161F1 CSEQCHN23 Gallus gallus cDNA clone ChEST291i15 5', mRNA sequence.    68  5e-23  4
AJ451757|AJ451757.1 Gallus gallus EST, clone library riken1, clone 29n17r1.    68  4e-22  4
BQ194903|BQ194903.1 UI-R-CN1-cmb-p-04-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone UI-R-CN1-cmb-p-04-0-UI 3', mRNA sequence.    46  2e-21  5
AF112206|AF112206.1 Homo sapiens ras-related protein rab-14 mRNA, complete cds.    62  9e-21  4
M34457|M34457.1 D.discoideum GTP-binding protein (SAS2) gene, complete cds.    86  1e-19  3
BG668408|BG668408.1 DRAADB03 Rat DRG Library Rattus norvegicus cDNA clone DRAADB03 5', mRNA sequence.    42  3e-19  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02927_1(U02927|pid:none) Dictyostelium discoideum Ax3 Rab4 mRNA...   384   e-106
(P61107) RecName: Full=Ras-related protein Rab-14;  &(Q52NJ6) Re...   298   1e-79
DQ414565_1(DQ414565|pid:none) Suberites domuncula Rab14 gene, pa...   297   2e-79
BT045578_1(BT045578|pid:none) Salmo salar clone ssal-rgf-525-209...   296   2e-79
BC045374_1(BC045374|pid:none) Danio rerio RAB14, member RAS onco...   296   4e-79
AJ968959_1(AJ968959|pid:none) Mus musculus mRNA for RAB14 protei...   295   5e-79
E42148(E42148)GTP-binding protein rab14 - rat                         294   1e-78
BC058341_1(BC058341|pid:none) Danio rerio RAB14, member RAS onco...   293   3e-78
AL137068_10(AL137068|pid:none) Human DNA sequence from clone RP1...   290   3e-77
T23530(T23530) hypothetical protein K09A9.2 - Caenorhabditis ele...   286   3e-76

 psg: 0.80  gvh: 0.28  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSM129 is cyt

>SSM129Z.Seq
----------TTTAAATACATCATTATTGGTGATATGGGTGTAGGTAAATCATGTCTCCT
TCACCAATTCACTGAAAATAAATTCGTCCCAGATTCACCACATACAATTGGTGTAGAGTT
TGGTACAAGAATTGTAGATGTAAATAATAAAAAAATTAAATTACAAATTTGGGATACTGC
AGGTCAAGAAAGATTCAGGGCAGTTACACGTTCATATTATAGAGGTGCAGCAGGTGCATT
ATTAGTTTATGATATTACAAGAAGAATTACATACAACCACTTAACCACTTGGTTAACTGA
TGCTAGAAATCTTACTAATCCAAACACTGTCATCATGTTAATTGGTAACAAAAAAGATTT
GGAAGGTCAAAGAGATGTCACCTATGAAGAGGCTTCTGCTTTTGCAAAACAAAATGGTTT
AATTTTTGTGGAATCTAGTGCAAAAACTGGTGAGAATGTAGAAGAAGCTTTCTTAAGAAC
TGCTAAATTAATTTTCCAAAGCGTTCAAGAGGGTAATGTTGATCTCATCCCGGATGGAGG
TATTACCAAGAACCCACCACAAACCATCACTGATAAACCTCAAGATGCCAGTAAATGTTC
TTGTTAATAAAATTTTAAAG