>SSM120 (SSM120Q) /CSM/SS/SSM1-A/SSM120Q.Seq.d/
XXXXXXXXXXTTATTATTTTATATATTCTTAGAGATAGAATATTTGAAAATATTACTCAT
CAATCAATTTTAGAAGGTTGTCCATTTGTTGACGTTGGTTCTCAATTTTTATTTATTTTA
GTTTTAGATTTAACTTTATCAAATCTTTGGGAAATTATTTATAGTGTTTCAATGGCATAT
ATTGGAAGAAGAAGAGAAAAGAGTGGTAAAAAATCAACAGAATCTTATAAACCTGAATTT
GAAATTTCTGAAGAATATTTGGAGATTTTGTATAGACAATTTATTGTATATTTAGGTTTA
CCAATTTATCCAATTGTAACTTTATTTGGTGTTGTTTGTAATATTGTTGAATATTATGTT
GATAGATTCAGATTAATTAGAATTTGTAAAAAACCACATAGAATGCAAGGTTCTATGAAA
AAGTTTTTATCATTTTATTTATTATTCATCTCTTTAATTAGTGTTGCTAGTTATCCGTAT
GGTTCAGGTTGGGTTTTAATTCAAATTGGTTTTAAAACTGGAAATTTAAATACTAATTGT
GGTTATTTATTCGATGGTGATATTCCAGTTTCTGATTCTTCATCTTCAAGTACTGGAAAT
GGAATTGGTATTAAAATCTAAAAAAAATAAAAAATATAAAAAAAAATATAAAAAAATAAA
GAAAAATAAA

---IILYILRDRIFENITHQSILEGCPFVDVGSQFLFILVLDLTLSNLWEIIYSVSMAYI
GRRREKSGKKSTESYKPEFEISEEYLEILYRQFIVYLGLPIYPIVTLFGVVCNIVEYYVD
RFRLIRICKKPHRMQGSMKKFLSFYLLFISLISVASYPYGSGWVLIQIGFKTGNLNTNCG
YLFDGDIPVSDSSSSSTGNGIGIKI*kk*ki*kki*knkek*

Frame A:
---yyfiys*r*ni*kyyssinfrrlsic*rwfsifiyfsfrfnfikslgnyl*cfngiy
wkkkrkew*kinril*t*i*nf*rifgdfv*tiycifrftnlsncnfiwccl*yc*ilc*
*iqin*nl*ktt*narfyekvfiilfiihlfn*cc*lsvwfrlgfnsnwf*nwkfky*lw
lfirw*yssf*ffifkywkwnwy*nlkkiknikknikk*rki


Frame B:
---IILYILRDRIFENITHQSILEGCPFVDVGSQFLFILVLDLTLSNLWEIIYSVSMAYI
GRRREKSGKKSTESYKPEFEISEEYLEILYRQFIVYLGLPIYPIVTLFGVVCNIVEYYVD
RFRLIRICKKPHRMQGSMKKFLSFYLLFISLISVASYPYGSGWVLIQIGFKTGNLNTNCG
YLFDGDIPVSDSSSSSTGNGIGIKI*kk*ki*kki*knkek*


Frame C:
---lfyifleieylkillinqf*kvvhlltlvlnfylf*f*i*lyqifgklfivfqwhil
eeeekrvvknqqnlinlnlkflkniwrfcidnllyi*vyqfiql*lylvlfvillnimli
dsd*lefvknhieckvl*ksfyhfiyyssl*lvllvirmvqvgf*fklvlklei*ilivv
iysmvifqflilhlqvlemelvlkskknkkykkkykkikknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM120 (SSM120Q) /CSM/SS/SSM1-A/SSM120Q.Seq.d/                        896   0.0
CFF444 (CFF444Q) /CSM/CF/CFF4-B/CFF444Q.Seq.d/                        858   0.0
SSG107 (SSG107Q) /CSM/SS/SSG1-A/SSG107Q.Seq.d/                        813   0.0
AFF355 (AFF355Q) /CSM/AF/AFF3-C/AFF355Q.Seq.d/                        182   5e-45
SSF716 (SSF716Q) /CSM/SS/SSF7-A/SSF716Q.Seq.d/                         38   0.17
SSE323 (SSE323Q) /CSM/SS/SSE3-A/SSE323Q.Seq.d/                         38   0.17
SSC817 (SSC817Q) /CSM/SS/SSC8-A/SSC817Q.Seq.d/                         38   0.17
SSA593 (SSA593Q) /CSM/SS/SSA5-D/SSA593Q.Seq.d/                         38   0.17
VSI644 (VSI644Q) /CSM/VS/VSI6-B/VSI644Q.Seq.d/                         36   0.66
VSC652 (VSC652Q) /CSM/VS/VSC6-C/VSC652Q.Seq.d/                         36   0.66

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX344569|AX344569.1 Sequence 20 from Patent WO0200932.            34  0.002  11
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.            32  0.028  13
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    40  0.031  7
AX344571|AX344571.1 Sequence 22 from Patent WO0200932.            30  0.049  11
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          42  0.071  8
AC023200|AC023200.6 Homo sapiens chromosome 8, clone RP11-48D4, complete sequence.    40  0.082  5
AY072186|AY072186.1 Arabidopsis thaliana putative protein kinase (At1g07870) mRNA, complete cds.    36  0.086  2
AC013361|AC013361.6 Homo sapiens chromosome 18, clone RP11-367D23, complete sequence.    38  0.12  6
AC100781|AC100781.2 Homo sapiens chromosome 18, clone RP11-124E7, complete sequence.    38  0.13  6
AC009321|AC009321.18 Homo sapiens 12 BAC RP11-392B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.13  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK074065_1(AK074065|pid:none) Homo sapiens mRNA for FLJ00136 pro...    49   2e-04
AY057379_1(AY057379|pid:none) Homo sapiens EVIN1 (EVIN1) mRNA, c...    49   2e-04
BC023597_1(BC023597|pid:none) Homo sapiens transmembrane channel...    49   2e-04
AB002405_1(AB002405|pid:none) Homo sapiens mRNA for LAK-4p, comp...    49   2e-04
BC018346_1(BC018346|pid:none) Homo sapiens transmembrane channel...    49   2e-04
AY236496_1(AY236496|pid:none) Homo sapiens transmembrane channel...    46   0.001
BC073096_1(BC073096|pid:none) Xenopus laevis MGC83549 protein, m...    44   0.003
AY581311_1(AY581311|pid:none) Gallus gallus transmembrane channe...    44   0.004
BC119987_1(BC119987|pid:none) Bos taurus transmembrane channel-l...    43   0.007
AK077671_1(AK077671|pid:none) Mus musculus 8 days embryo whole b...    42   0.013

 psg: 0.66  gvh: 0.62  alm: 0.29  top: 0.80  tms: 0.20  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSM120 is end

>SSM120Z.Seq
----------TTATTATTTTATATATTCTTAGAGATAGAATATTTGAAAATATTACTCAT
CAATCAATTTTAGAAGGTTGTCCATTTGTTGACGTTGGTTCTCAATTTTTATTTATTTTA
GTTTTAGATTTAACTTTATCAAATCTTTGGGAAATTATTTATAGTGTTTCAATGGCATAT
ATTGGAAGAAGAAGAGAAAAGAGTGGTAAAAAATCAACAGAATCTTATAAACCTGAATTT
GAAATTTCTGAAGAATATTTGGAGATTTTGTATAGACAATTTATTGTATATTTAGGTTTA
CCAATTTATCCAATTGTAACTTTATTTGGTGTTGTTTGTAATATTGTTGAATATTATGTT
GATAGATTCAGATTAATTAGAATTTGTAAAAAACCACATAGAATGCAAGGTTCTATGAAA
AAGTTTTTATCATTTTATTTATTATTCATCTCTTTAATTAGTGTTGCTAGTTATCCGTAT
GGTTCAGGTTGGGTTTTAATTCAAATTGGTTTTAAAACTGGAAATTTAAATACTAATTGT
GGTTATTTATTCGATGGTGATATTCCAGTTTCTGATTCTTCATCTTCAAGTACTGGAAAT
GGAATTGGTATTAAAATCTAAAAAAAATAAAAAATATAAAAAAAAATATAAAAAAATAAA
GAAAAATAAA