>SSM116 (SSM116Q) /CSM/SS/SSM1-A/SSM116Q.Seq.d/
XXXXXXXXXXAACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATG
CACTTTGTGACCCAGTAGCTACATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTC
CACCTGCATCTGTTTCAGACTGTGAATTCCAAGGTTCAAGTGCATCTGATTGCTCAGCAA
TTAATATGAAAGGTTTAATGGGCGACTGGAAACACAAAGTCGTAGAATTTATACCTCCAA
CTATTGATATACATCCAGGTGGTTTAGTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAA
TCGGACTCTTATTGGTAATCGGTTCATTAGGTGTCATCATGAAATTCCAAAATAAATAAA
TTATCTTTTAACTAGAAGTAGAAAAGTAATGAAAAATAGATAAAAAAAAAAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAAAA
AAAAGTGTAAATATACTATAAATAGCTTATCATATTAATGTAATCATAATAAAACCAGTC
GAAAATTTTTTAAAGAACAAAACAAAATAA

---TYMCSYTFVGTTPPCNALCDPVATCADGFTYGGQVIPPASVSDCEFQGSSASDCSAI
NMKGLMGDWKHKVVEFIPPTIDIHPGGLVRGSLLGFGVLIGLLLVIGSLGVIMKFQNK*i
if*levek**kidkkknnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnkk
kckytinslsy*cnhnktsrkffkeqnki

Frame A:
---TYMCSYTFVGTTPPCNALCDPVATCADGFTYGGQVIPPASVSDCEFQGSSASDCSAI
NMKGLMGDWKHKVVEFIPPTIDIHPGGLVRGSLLGFGVLIGLLLVIGSLGVIMKFQNK*i
if*levek**kidkkknnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnkk
kckytinslsy*cnhnktsrkffkeqnki


Frame B:
---hicavtlllelhlhvmhfvtq*lhvqmdllmevklfhlhlfqtvnskvqvhliaqql
i*kv*watgntks*nlylqlliyiqvv**edlc*vlvf*sdsyw*svh*vss*nskinkl
sfn*k*ksnek*ikkkiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiitkk
svnil*iayhinviiikpvenflknktk*


Frame C:
---iyvqlhfcwnytsm*ctl*pssymcrwiylwrssystcicfrl*iprfkci*llsn*
yerfngrletqsrriytsny*ytsrwfskrifvrfwcfnrtlignrfirchheipk*iny
lltrsrkvmknr*kkk*****************************************qkk
v*iyyk*liilm*s**nqskif*rtkqn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM116 (SSM116Q) /CSM/SS/SSM1-A/SSM116Q.Seq.d/                        745   0.0
SSK567 (SSK567Q) /CSM/SS/SSK5-C/SSK567Q.Seq.d/                        745   0.0
SSE191 (SSE191Q) /CSM/SS/SSE1-D/SSE191Q.Seq.d/                        726   0.0
SSE207 (SSE207Q) /CSM/SS/SSE2-A/SSE207Q.Seq.d/                        662   0.0
SSL326 (SSL326Q) /CSM/SS/SSL3-B/SSL326Q.Seq.d/                        624   e-178
SSH375 (SSH375Q) /CSM/SS/SSH3-D/SSH375Q.Seq.d/                        622   e-177
SSC455 (SSC455Q) /CSM/SS/SSC4-C/SSC455Q.Seq.d/                        539   e-152
SSB635 (SSB635Q) /CSM/SS/SSB6-B/SSB635Q.Seq.d/                        511   e-144
SSK321 (SSK321Q) /CSM/SS/SSK3-A/SSK321Q.Seq.d/                        170   2e-41
VFM893 (VFM893Q) /CSM/VF/VFM8-D/VFM893Q.Seq.d/                         38   0.16

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC079676|AC079676.4 Arabidopsis thaliana chromosome 1 BAC F6D5 genomic sequence, complete sequence.    38  0.075  2
AC116682|AC116682.2 Mus musculus clone RP24-475F22, WORKING DRAFT SEQUENCE, 13 ordered pieces.    44  0.28  3
AC129254|AC129254.3 Rattus norvegicus clone CH230-137P11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.45  2
G53363|G53363.1 SHGC-81541 Human Homo sapiens STS genomic, sequence tagged site.    46  0.52  1
AQ058922|AQ058922.1 RPCI11-42L22.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-42L22, genomic survey sequence.    46  0.52  1
AC004230|AC004230.1 Homo sapiens Chromosome 11q12.2 PAC clone pDJ671j21, complete sequence.    42  0.84  2
AC123923|AC123923.2 Mus musculus chromosome UNK clone RP24-228I17, WORKING DRAFT SEQUENCE, 1 unordered piece.    44  0.88  3
AC003977|AC003977.1 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-542B9, complete sequence.    38  1.0  5
AC012172|AC012172.7 Homo sapiens chromosome 16 clone RP11-148F12, complete sequence.    38  1.2  5
AC114556|AC114556.1 Homo sapiens chromosome 18 clone CTD-2562H17 map 18, LOW-PASS SEQUENCE SAMPLING.    46  1.9  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC120529_23(AC120529|pid:none) Oryza sativa (japonica cultivar-g...    34   3.9
AC051632_5(AC051632|pid:none) Oryza sativa chromosome 10 BAC OSJ...    34   3.9
(Q12019) RecName: Full=Midasin; AltName: Full=MIDAS-containing p...    33   8.7
AC074282_2(AC074282|pid:none) Oryza sativa (japonica cultivar-gr...    33   8.7
AC079936_17(AC079936|pid:none) Oryza sativa (japonica cultivar-g...    33   8.7

 psg: 0.90  gvh: 0.52  alm: 0.18  top: 0.63  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSM116 is cyt

>SSM116Z.Seq
----------AACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATG
CACTTTGTGACCCAGTAGCTACATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTC
CACCTGCATCTGTTTCAGACTGTGAATTCCAAGGTTCAAGTGCATCTGATTGCTCAGCAA
TTAATATGAAAGGTTTAATGGGCGACTGGAAACACAAAGTCGTAGAATTTATACCTCCAA
CTATTGATATACATCCAGGTGGTTTAGTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAA
TCGGACTCTTATTGGTAATCGGTTCATTAGGTGTCATCATGAAATTCCAAAATAAATAAA
TTATCTTTTAACTAGAAGTAGAAAAGTAATGAAAAATAGATAAAAAAAAAAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAAAA
AAAAGTGTAAATATACTATAAATAGCTTATCATATTAATGTAATCATAATAAAACCAGTC
GAAAATTTTTTAAAGAACAAAACAAAATAA