SSM115
Library SS
(Link to library)
Clone ID SSM115
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05836-1
Original site URL
Representative seq. ID SSM115E
(Link to Original site)
Representative DNA sequence
>SSM115 (SSM115Q) /CSM/SS/SSM1-A/SSM115Q.Seq.d/
CGGACGCGTGGGGTGCGCTATGTTCACAAAATATGCAACATCCTTGTTTGGAGAAATATC
TCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAAAGCTTTGAATAGGCTATCAT
TATTTGGTGTTGAGAAAGATGTAGACTTTGATGATCCTCTCTCAAAGTGGTATAATAATA
AAGAAGGTTATGTTATGGATAGATTCTCTTACTTTATGTGTTTCAAATGTAAGAAACCCT
ATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAATTGCTGGTGAGCATA
AACCTGAAGAATTGGTTTGTGGAGGTTGTAGTTCAAGTGGTAATGAAAATTGTAAAATCC
ATGGAAAAGAGTTTATAGAGTACAAATGTAAATATTGTTGTCGTATCTCTGCTTTCTTTT
GTTGGGGTAACTCTCATTTCTGTGTTGAATGTCATAGAAATGTAAATCATGTTGCGCAAA
TCCCAAAAACTCAATTACCTCAATGTAAGTGTGAAGGAAGTGAAAAACATATTTCTGGTG
AAGAATTTTGTTATGGATGTTCAATGTGTAAAATAATTAGTAATAGTGAATAATCATAAT
TTATTTTTATTATTTATTATTTATTATTAAACATATCAAAATAAAAATAAATAAAAAAAA
AATTTTGTTATTTGCAAAAATTAAAAAAAAAAAAA
sequence update 1999. 6.28
Translated Amino Acid sequence
DAWGALCSQNMQHPCLEKYLTPINELYGFIKVKALNRLSLFGVEKDVDFDDPLSKWYNNK
EGYVMDRFSYFMCFKCKKPYFGGEKVCAIADENRIAGEHKPEELVCGGCSSSGNENCKIH
GKEFIEYKCKYCCRISAFFCWGNSHFCVECHRNVNHVAQIPKTQLPQCKCEGSEKHISGE
EFCYGCSMCKIISNSE*s*fifiiyylllnisk*k*ikkkfcylqklkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
rtrgvryvhkicnilvwrnishqlmnfmvl*rlkl*igyhylvlrkm*tlmilsqsgiii
kkvmlwidsltlcvsnvrnpilvvkrfvqlltkiellvsinlknwfvevvvqvvmkivks
meksl*stnvnivvvsllsfvgvtlisvlnviem*imlrksqklnylnvsvkevkniflv
knfvmdvqcvk*lvivnnhnlfllfiiyy*tyqnknk*kknfvickn*kkk


Frame B:
grvgcamftkyatslfgeishtn**tlwfykg*sfe*aiiiwc*ercrl**sslkvv***
rrlcyg*illlyvfqm*etlfww*kglcnc*rk*ncw*a*t*riglwrl*fkw**kl*np
wkrvyrvqm*illsylcflllg*lsflc*ms*kcksccanpknsitsm*v*rk*ktyfw*
rillwmfnv*nn****iiiiyfyyllfiikhikikinkkkillfakikkkk


Frame C:
DAWGALCSQNMQHPCLEKYLTPINELYGFIKVKALNRLSLFGVEKDVDFDDPLSKWYNNK
EGYVMDRFSYFMCFKCKKPYFGGEKVCAIADENRIAGEHKPEELVCGGCSSSGNENCKIH
GKEFIEYKCKYCCRISAFFCWGNSHFCVECHRNVNHVAQIPKTQLPQCKCEGSEKHISGE
EFCYGCSMCKIISNSE*s*fifiiyylllnisk*k*ikkkfcylqklkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM115 (SSM115Q) /CSM/SS/SSM1-A/SSM115Q.Seq.d/ 1185 0.0
VHP564 (VHP564Q) /CSM/VH/VHP5-C/VHP564Q.Seq.d/ 38 0.17
VFK818 (VFK818Q) /CSM/VF/VFK8-A/VFK818Q.Seq.d/ 38 0.17
VFB895 (VFB895Q) /CSM/VF/VFB8-D/VFB895Q.Seq.d/ 38 0.17
SSM173 (SSM173Q) /CSM/SS/SSM1-D/SSM173Q.Seq.d/ 38 0.17
SSF327 (SSF327Q) /CSM/SS/SSF3-B/SSF327Q.Seq.d/ 38 0.17
SFI622 (SFI622Q) /CSM/SF/SFI6-A/SFI622Q.Seq.d/ 38 0.17
SFG317 (SFG317Q) /CSM/SF/SFG3-A/SFG317Q.Seq.d/ 38 0.17
AHP730 (AHP730Q) /CSM/AH/AHP7-B/AHP730Q.Seq.d/ 38 0.17
AHG533 (AHG533Q) /CSM/AH/AHG5-B/AHG533Q.Seq.d/ 38 0.17

own update 2002.12.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH579723|BH579723.1 BOGFE16TF BOGF Brassica oleracea genomic clone BOGFE16, DNA sequence. 36 0.17 2
AC101919|AC101919.4 Mus musculus clone RP24-158A6, WORKING DRAFT SEQUENCE, 4 unordered pieces. 40 1.4 2
AC101908|AC101908.3 Mus musculus clone RP24-275J1, WORKING DRAFT SEQUENCE, 4 unordered pieces. 40 1.6 2
AC069307|AC069307.7 Homo sapiens BAC clone RP11-738E22 from 4, complete sequence. 34 2.0 5
AC072045|AC072045.18 Homo sapiens 3 BAC RP11-77D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 2.5 3
AI004366|AI004366.1 ot95d04.x1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone IMAGE:1624519 3', mRNA sequence. 30 2.6 3
AA425652|AA425652.1 zw47e03.s1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone IMAGE:773212 3', mRNA sequence. 30 2.8 3
AW085230|AW085230.1 xe07d12.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:2606423 3', mRNA sequence. 30 3.5 3
AI422986|AI422986.1 tf31a05.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE:2097776 3', mRNA sequence. 30 4.0 3
BQ003087|BQ003087.1 UI-H-EI1-ayx-i-16-0-UI.s1 NCI_CGAP_EI1 Homo sapiens cDNA clone IMAGE:5844951 3', mRNA sequence. 30 4.3 3
dna update 2003. 9.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCB... 168 2e-40
AF075587_1(AF075587|pid:none) Homo sapiens protein associated wi... 168 2e-40
AL359257_2(AL359257|pid:none) Human DNA sequence from clone RP11... 168 2e-40
BC037971_1(BC037971|pid:none) Homo sapiens MYC binding protein 2... 168 2e-40
AF083244_1(AF083244|pid:none) Homo sapiens HSPC026 mRNA, complet... 167 2e-40
AB172863_1(AB172863|pid:none) Macaca fascicularis brain cDNA clo... 167 3e-40
BC059257_1(BC059257|pid:none) Mus musculus MYC binding protein 2... 167 3e-40
AY325887_1(AY325887|pid:none) Mus musculus highwire (Phr1) mRNA,... 167 4e-40
AB172733_1(AB172733|pid:none) Macaca fascicularis brain cDNA clo... 165 1e-39
AY113376_1(AY113376|pid:none) Drosophila melanogaster LP10764 fu... 164 2e-39
protein update 2009. 7. 9
PSORT

psg: 0.75 gvh: 0.27 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSM115 is nuc

5' end seq. ID SSM115F
5' end seq.
>SSM115F.Seq
CGGACGCGTGGGGTGCGCTATGTTCACAAAATATGCAACATCCTTGTTTGGAGAAATATC
TCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAAAGCTTTGAATAGGCTATCAT
TATTTGGTGTTGAGAAAGATGTAGACTTTGATGATCCTCTCTCAAAGTGGTATAATAATA
AAGAAGGTTATGTTATGGATAGATTCTCTTACTTTATGTGTTTCAAATGTAAGAAACCCT
ATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAATTGCTGGTGAGCATA
AACCTGAAGA----------
Length of 5' end seq. 310
3' end seq. ID SSM115Z
3' end seq.
>SSM115Z.Seq
----------ATATCTCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAAAGCTT
TGAATAGGCTATCATTATTTGGTGTTGAGAAAGATGTAGACTTTGATGATCCTCTCTCAA
AGTGGTATAATAATAAAGAAGGTTATGTTATGGATAGATTCTCTTACTTTATGTGTTTCA
AATGTAAGAAACCCTATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAA
TTGCTGGTGAGCATAAACCTGAAGAATTGGTTTGTGGAGGTTGTAGTTCAAGTGGTAATG
AAAATTGTAAAATCCATGGAAAAGAGTTTATAGAGTACAAATGTAAATATTGTTGTCGTA
TCTCTGCTTTCTTTTGTTGGGGTAACTCTCATTTCTGTGTTGAATGTCATAGAAATGTAA
ATCATGTTGCGCAAATCCCAAAAACTCAATTACCTCAATGTAAGTGTGAAGGAAGTGAAA
AACATATTTCTGGTGAAGAATTTTGTTATGGATGTTCAATGTGTAAAATAATTAGTAATA
GTGAATAATCATAATTTATTTTTATTATTTATTATTTATTATTAAACATATCAAAATAAA
AATAAATAAAAAAAAAATTTTGTTATTTGCAAAAATTAAAAAAAAAAAAA
Length of 3' end seq. 640
Connected seq. ID SSM115P
Connected seq.
>SSM115P.Seq
CGGACGCGTGGGGTGCGCTATGTTCACAAAATATGCAACATCCTTGTTTGGAGAAATATC
TCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAAAGCTTTGAATAGGCTATCAT
TATTTGGTGTTGAGAAAGATGTAGACTTTGATGATCCTCTCTCAAAGTGGTATAATAATA
AAGAAGGTTATGTTATGGATAGATTCTCTTACTTTATGTGTTTCAAATGTAAGAAACCCT
ATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAATTGCTGGTGAGCATA
AACCTGAAGA----------ATATCTCACACCAATTAATGAACTTTATGGTTTTATAAAG
GTTAAAGCTTTGAATAGGCTATCATTATTTGGTGTTGAGAAAGATGTAGACTTTGATGAT
CCTCTCTCAAAGTGGTATAATAATAAAGAAGGTTATGTTATGGATAGATTCTCTTACTTT
ATGTGTTTCAAATGTAAGAAACCCTATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGAC
GAAAATAGAATTGCTGGTGAGCATAAACCTGAAGAATTGGTTTGTGGAGGTTGTAGTTCA
AGTGGTAATGAAAATTGTAAAATCCATGGAAAAGAGTTTATAGAGTACAAATGTAAATAT
TGTTGTCGTATCTCTGCTTTCTTTTGTTGGGGTAACTCTCATTTCTGTGTTGAATGTCAT
AGAAATGTAAATCATGTTGCGCAAATCCCAAAAACTCAATTACCTCAATGTAAGTGTGAA
GGAAGTGAAAAACATATTTCTGGTGAAGAATTTTGTTATGGATGTTCAATGTGTAAAATA
ATTAGTAATAGTGAATAATCATAATTTATTTTTATTATTTATTATTTATTATTAAACATA
TCAAAATAAAAATAAATAAAAAAAAAATTTTGTTATTTGCAAAAATTAAAAAAAAAAAAA
Length of connected seq. 950
Full length Seq ID SSM115E
Full length Seq.
>SSM115E.Seq
CGGACGCGTGGGGTGCGCTATGTTCACAAAATATGCAACATCCTTGTTTGGAGAAATATC
TCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAAAGCTTTGAATAGGCTATCAT
TATTTGGTGTTGAGAAAGATGTAGACTTTGATGATCCTCTCTCAAAGTGGTATAATAATA
AAGAAGGTTATGTTATGGATAGATTCTCTTACTTTATGTGTTTCAAATGTAAGAAACCCT
ATTTTGGTGGTGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAATTGCTGGTGAGCATA
AACCTGAAGAATTGGTTTGTGGAGGTTGTAGTTCAAGTGGTAATGAAAATTGTAAAATCC
ATGGAAAAGAGTTTATAGAGTACAAATGTAAATATTGTTGTCGTATCTCTGCTTTCTTTT
GTTGGGGTAACTCTCATTTCTGTGTTGAATGTCATAGAAATGTAAATCATGTTGCGCAAA
TCCCAAAAACTCAATTACCTCAATGTAAGTGTGAAGGAAGTGAAAAACATATTTCTGGTG
AAGAATTTTGTTATGGATGTTCAATGTGTAAAATAATTAGTAATAGTGAATAATCATAAT
TTATTTTTATTATTTATTATTTATTATTAAACATATCAAAATAAAAATAAATAAAAAAAA
AATTTTGTTATTTGCAAAAATTAAAAAAAAAAAAA
Length of full length seq. 695