>SSM108 (SSM108Q) /CSM/SS/SSM1-A/SSM108Q.Seq.d/
XXXXXXXXXXAAATCAATTAATTTTTGTAATTAGACAAAAAGTTAAATTTTCATTTTATA
AAAAATATTTTATCTATGATGGTAATGATAACCTTTTGGCAACAGTTAAACAAAAATCAT
TGTTTAAACCAAAATTAGAAATCGTTTTAAATGAAAATGAGCAATACACATGTAAAGGTG
ATTTTTTTAGTTATAATTTTCAAATCTTAGATGATGGTCTTCCAATTGGAAGTGTTACAA
AGAGAGTATTATCATGGGGTGATACATATATGTTGGATATATCAGAGAATTTCGAACCAT
CCTTCTTTGTTGCAATTGTTATTACAATTGACGATTGTGTTCATAGAGAAAACAATGGAT
AATAGTTTATATTAATTTTTTGACCCCTTAAAAAGTTTATATGAATATAAAAACAAAATT
ATTATTATTAAAATAAATTTAAAATAATCTTTTAAATTTATAAACAATTGCATTCATTAT
TTTTCATTTAAAAAAATTAATTAATTTAGAATTCCAATTGTCAGGAAAGAAAAAAGGAAA
AAAAAAAAAAAAAAAAAAAATTAATATAAACATCAACTATAGTTCGGAATTGTTTAAAAA
AAAAATAAAATTAAAATTAATTATAGTTTAGAATTGTTTA

---NQLIFVIRQKVKFSFYKKYFIYDGNDNLLATVKQKSLFKPKLEIVLNENEQYTCKGD
FFSYNFQILDDGLPIGSVTKRVLSWGDTYMLDISENFEPSFFVAIVITIDDCVHRENNG*
*filif*plkkfi*i*kqnyyy*nkfkiif*iykqlhslffi*kn*li*nsncqerkkek
kkkkkkli*tstivrnclkkk*n*n*l*friv

Frame A:
---NQLIFVIRQKVKFSFYKKYFIYDGNDNLLATVKQKSLFKPKLEIVLNENEQYTCKGD
FFSYNFQILDDGLPIGSVTKRVLSWGDTYMLDISENFEPSFFVAIVITIDDCVHRENNG*
*filif*plkkfi*i*kqnyyy*nkfkiif*iykqlhslffi*kn*li*nsncqerkkek
kkkkkkli*tstivrnclkkk*n*n*l*friv


Frame B:
---in*fl*ldkklnfhfiknilsmmvmitfwqqlnknhclnqn*ksf*mkmsnthvkvi
flviifks*mmvfqlevlqreyyhgvihicwiyqrisnhpsllqlllqltivfiektmdn
sly*ffdplkslyeyknkiiiikinlk*sfkfinncihyfsfkkin*fripivrkekrkk
kkkkkn*ykhql*fgiv*kknkikinyslelf


Frame C:
---sinfcn*tks*ifil*kifyl*w***pfgns*tkiiv*tkirnrfk*k*aihm*r*f
f*l*fsnlr*wssnwkcykesiimg*yiyvgyirefrtillccncyyn*rlcs*rkqwii
vyinfltp*kvymniktkllllk*i*nnllnl*tiafiifhlkklinlefqlsgkkkgkk
kkkkkinininysselfkkkiklkliiv*ncl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ596 (VSJ596Q) /CSM/VS/VSJ5-D/VSJ596Q.Seq.d/                        704   0.0
SSM271 (SSM271Q) /CSM/SS/SSM2-C/SSM271Q.Seq.d/                        704   0.0
SSM108 (SSM108Q) /CSM/SS/SSM1-A/SSM108Q.Seq.d/                        704   0.0
SSF582 (SSF582Q) /CSM/SS/SSF5-D/SSF582Q.Seq.d/                        704   0.0
SSJ181 (SSJ181Q) /CSM/SS/SSJ1-D/SSJ181Q.Seq.d/                        680   0.0
SSG313 (SSG313Q) /CSM/SS/SSG3-A/SSG313Q.Seq.d/                        595   e-169
SSF839 (SSF839Q) /CSM/SS/SSF8-B/SSF839Q.Seq.d/                        575   e-163
SSB341 (SSB341Q) /CSM/SS/SSB3-B/SSB341Q.Seq.d/                        412   e-114
SSD645 (SSD645Q) /CSM/SS/SSD6-B/SSD645Q.Seq.d/                        214   1e-54
SFE281 (SFE281Q) /CSM/SF/SFE2-D/SFE281Q.Seq.d/                         40   0.040

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX346223|AX346223.1 Sequence 1294 from Patent WO0200928.          40  0.014  5
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.016  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38  0.022  10
AC116676|AC116676.3 Mus musculus clone RP23-22C3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.035  5
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  0.042  11
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  0.079  5
AC136974|AC136974.11 Medicago truncatula clone mth2-22e9, complete sequence.    36  0.095  5
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    34  0.10  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36  0.11  11
BM161135|BM161135.1 EST563658 PyBS Plasmodium yoelii yoelii cDNA clone PYCKB05 5' end, mRNA sequence.    38  0.13  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000813_3612(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    60   7e-08
AM412317_1228(AM412317|pid:none) Clostridium botulinum A str. AT...    50   4e-05
CP000962_1287(CP000962|pid:none) Clostridium botulinum A3 str. L...    50   7e-05
CP000560_3492(CP000560|pid:none) Bacillus amyloliquefaciens FZB4...    50   7e-05
CP000114_828(CP000114|pid:none) Streptococcus agalactiae A909, c...    44   0.004
CP001022_2966(CP001022|pid:none) Exiguobacterium sibiricum 255-1...    43   0.007
AP009256_1251(AP009256|pid:none) Bifidobacterium adolescentis AT...    39   0.13
CP000048_245(CP000048|pid:none) Borrelia hermsii DAH, complete g...    35   1.8
(A5N7W7) RecName: Full=GTP-binding protein engA;  &AP009049_1252...    34   3.1
EU956268_1(EU956268|pid:none) Zea mays clone 1559883 hypothetica...    33   5.3

 psg: 0.58  gvh: 0.24  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSM108 is cyt

>SSM108Z.Seq
----------AAATCAATTAATTTTTGTAATTAGACAAAAAGTTAAATTTTCATTTTATA
AAAAATATTTTATCTATGATGGTAATGATAACCTTTTGGCAACAGTTAAACAAAAATCAT
TGTTTAAACCAAAATTAGAAATCGTTTTAAATGAAAATGAGCAATACACATGTAAAGGTG
ATTTTTTTAGTTATAATTTTCAAATCTTAGATGATGGTCTTCCAATTGGAAGTGTTACAA
AGAGAGTATTATCATGGGGTGATACATATATGTTGGATATATCAGAGAATTTCGAACCAT
CCTTCTTTGTTGCAATTGTTATTACAATTGACGATTGTGTTCATAGAGAAAACAATGGAT
AATAGTTTATATTAATTTTTTGACCCCTTAAAAAGTTTATATGAATATAAAAACAAAATT
ATTATTATTAAAATAAATTTAAAATAATCTTTTAAATTTATAAACAATTGCATTCATTAT
TTTTCATTTAAAAAAATTAATTAATTTAGAATTCCAATTGTCAGGAAAGAAAAAAGGAAA
AAAAAAAAAAAAAAAAAAAATTAATATAAACATCAACTATAGTTCGGAATTGTTTAAAAA
AAAAATAAAATTAAAATTAATTATAGTTTAGAATTGTTTA