NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL883
Library SS
(Link to library)
Clone ID SSL883
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04521-1
Original site URL
Representative seq. ID SSL883Z
(Link to Original site)
Representative DNA sequence 
>SSL883 (SSL883Q) /CSM/SS/SSL8-D/SSL883Q.Seq.d/
XXXXXXXXXXCACACGCAGTACACCTAGTTAATATTTTATTACCTTGAGCTCCATATCCT
AATTTTTCCATTTCAATTTTGTTTATACACTAGCGANCNNGCGACAGTTGCNACAACAGC
CCCTCATAGCTTTTCGTTGTATCAACAAAAAACACTTTGATACACCTGTATATATATTAG
AAACAATTCCGTTAATTACCAATTTTTCACACAATCGGAGTAACTACACACTCCGCCAAT
TATCACCAGCAAAACAAAAACCACAAAGAAACAAAATTAAACTATAAAAAAAAAAAAAAA
AAAAAAAAAAAGACAAAATCTTTTATATATATAAAAATAAATATTTATTTATATATATAA
AAAAAAA
sequence update 1998. 2.24
Translated Amino Acid sequence 
---trstps*yfitlssis*FFHFNFVYTLAXXRQLXQQPLIAFRCINKKHFDTPVYILE
TIPLITNFSHNRSNYTLRQLSPAKQKPQRNKIKL*kkkkkkkkdkifyiyknkylfiyik
k
Translated Amino Acid sequence (All Frames) 
Frame A:
---trstps*yfitlssis*FFHFNFVYTLAXXRQLXQQPLIAFRCINKKHFDTPVYILE
TIPLITNFSHNRSNYTLRQLSPAKQKPQRNKIKL*kkkkkkkkdkifyiyknkylfiyik
k


Frame B:
---havhlvnillp*apypnfsisilfih*rxxdscxnsps*lfvvstkntlihlyiy*k
qfr*lpifhtigvtthsanyhqqnknhketklnykkkkkkkkktksfiyikiniylyi*k
k


Frame C:
---tqyt*lifyylelhilifpfqfclytsxxatvattaphsfslyqqktl*ytciyirn
nsvnyqfftqse*lhtppiitsktkttkkqn*tikkkkkkkkrqnllyi*k*ifiyiykk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL883 (SSL883Q) /CSM/SS/SSL8-D/SSL883Q.Seq.d/                        521   e-147
SSC210 (SSC210Q) /CSM/SS/SSC2-A/SSC210Q.Seq.d/                        256   2e-67
VHP822 (VHP822Q) /CSM/VH/VHP8-A/VHP822Q.Seq.d/                         36   0.35
SSF660 (SSF660Q) /CSM/SS/SSF6-C/SSF660Q.Seq.d/                         36   0.35
VSF873 (VSF873Q) /CSM/VS/VSF8-D/VSF873Q.Seq.d/                         34   1.4
VSA109 (VSA109Q) /CSM/VS/VSA1-A/VSA109Q.Seq.d/                         34   1.4
VHC532 (VHC532Q) /CSM/VH/VHC5-B/VHC532Q.Seq.d/                         34   1.4
VFK518 (VFK518Q) /CSM/VF/VFK5-A/VFK518Q.Seq.d/                         34   1.4
VFG854 (VFG854Q) /CSM/VF/VFG8-C/VFG854Q.Seq.d/                         34   1.4
CHD556 (CHD556Q) /CSM/CH/CHD5-C/CHD556Q.Seq.d/                         34   1.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***.   192  2e-52  3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   192  3e-50  4
AF387598|AF387598.2 Nicotiana tabacum EPSP synthase 1 (EPSPS1) gene, partial cds.    46  0.009  2
AF387597|AF387597.2 Nicotiana sylvestris EPSP synthase (EPSPS) gene, partial cds.    46  0.009  2
BG615974|BG615974.1 602643426F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE:4774231 5', mRNA sequence.    46  0.30  1
G31647|G31647.1 sWSS821 Eric D. Green Homo sapiens STS genomic, sequence tagged site.    46  0.30  1
AX411078|AX411078.1 Sequence 3725 from Patent WO0229103.          46  0.30  1
X52851|X52851.1 Human cyclophilin gene for cyclophilin (EC 5.2.1.8).    46  0.30  1
BF530146|BF530146.1 602040336F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE:4177976 5', mRNA sequence.    46  0.30  1
BI781896|BI781896.1 kh02g03.y1 Ascaris suum female head pAMP1 v2 Chiapelli McCarter Ascaris suum cDNA 5' similar to SW:NU2M_ASCSU P24877 NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 ;contains Alu repetitive element;, mRNA sequence.    34  0.37  2
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000896_1301(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c...    32   5.3
protein update 2009. 2. 3
PSORT 

 psg: 0.87  gvh: 0.58  alm: 0.48  top: 0.57  tms: 0.00  mit: 0.34  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSL883 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL883Z
3' end seq. 
>SSL883Z.Seq
----------CACACGCAGTACACCTAGTTAATATTTTATTACCTTGAGCTCCATATCCT
AATTTTTCCATTTCAATTTTGTTTATACACTAGCGANCNNGCGACAGTTGCNACAACAGC
CCCTCATAGCTTTTCGTTGTATCAACAAAAAACACTTTGATACACCTGTATATATATTAG
AAACAATTCCGTTAATTACCAATTTTTCACACAATCGGAGTAACTACACACTCCGCCAAT
TATCACCAGCAAAACAAAAACCACAAAGAAACAAAATTAAACTATAAAAAAAAAAAAAAA
AAAAAAAAAAAGACAAAATCTTTTATATATATAAAAATAAATATTTATTTATATATATAA
AAAAAAA
Length of 3' end seq. 357
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -