SSL851
Library SS
(Link to library)
Clone ID SSL851
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04010-1
Original site URL
Representative seq. ID SSL851P
(Link to Original site)
Representative DNA sequence
>SSL851 (SSL851Q) /CSM/SS/SSL8-C/SSL851Q.Seq.d/
CTGGATTCTGTCAATACAGATCACTACCATGTCCTCCATCATCTGACCCATGTTCTCAAG
CAGTTGGATGTGACGAAACTAGTGGAAATTGTACATATCAGAAAATCACTTGTCCAAATC
ACTCCAATCCTTGTATGAAATCAATGGGTTGTATTGCTTCACTTGGTGGAAGATGCCAAT
ATCAGTCAATTAATTGCACATCATCCGATCTATGTTCAGTTGGAAAATGTAATAACCAAA
CTGGTTCTTGTGAATTCTCTCCAGTAGTTTGTCCAAAACACTCTAATCCTTGTATGAAAT
CATTGGGTTGTAATTCTACAATTGGTGGAAAATGTCAATATCAGTCAATTGATTGTACAT
CAACCGATCCATGTTCAATTGGAAAATGTAATAACCAAACTGGTTCTTGTGAATTCTCTC
CAGTAGTTTGTCCAACTCATTCAAACCCTTGTATGAAATCAATAGGTTGTAATTCTTCAA
TTGGAAAATGTCAATATCAGTCAACTAATTGTACATCAACCGATCTATGTTCAGTTGGAA
AATGTAATAACCAAACTGGTTCCTGTGAATTTTCTCCAGTAGTTTGCCAAGATCCACCAC
CATGCTATAAATCTATGGXXXXXXXXXXGTTTCCTGGGTCCAATTCCCAGGATCCACTTC
CCATGTCCCTCCCATCTTCTGACCCCATGGTTCTCAAAGCCAGTTGGATTGTGGCCGGAA
ACTAGTGGAAAATTGTCCATATCCGGGAAATTCACTTGGCCCAAATCACTCCAATCCCTT
GGTATGAATCCAATGGGTTGTATTGCTTCACTTGGGTGGAAGATGCCAATATCAGTCAAT
TAATTGCACATCATCCGATCCTATGTTCAGTTGGAAAATGTATTAACCAAACTGGTTCTT
GTGAATTCTCTCCAGTAGTTTGTCCAAAACACTCTAATCCTTGTATGAAATCATTGGGTT
GTAATTCTACAATTGGTGGAAAATGTCAATATCAGTCAATTGATTGTACATCAACCGATC
CATGTTCAATTGGAAAATGTAATAACCAAACTGGTTCTTGTGAATTCTCTCCAGTAGTTT
GTCCAACTCATTCAAACCCTTGTATGAAATCAATAGGTTGTAATTCTTCAATTGGAAAAT
GTCAATATCAGTCAACTAATTGTACATCAACCGATCTATGTTCAGTTGGAAAATGTAATA
ACCAAACTGGTTCCTGTGAATTTTCTCCAGTAGTTTGCCAAGATCCACCACCATGCTATA
AATCTATGGGTTGTGTCAATGGCAGATGCGGATATGTAAACACTGGTGATTGTTAAACCA
CTCCTTAATTTTTAAAGGTTAAACTCTATAAAATAAATAAATAAAAAAAAAATAAAAAAA
AATTTTTAA
sequence update 1998.12.24
Translated Amino Acid sequence
GFCQYRSLPCPPSSDPCSQAVGCDETSGNCTYQKITCPNHSNPCMKSMGCIASLGGRCQY
QSINCTSSDLCSVGKCNNQTGSCEFSPVVCPKHSNPCMKSLGCNSTIGGKCQYQSIDCTS
TDPCSIGKCNNQTGSCEFSPVVCPTHSNPCMKSIGCNSSIGKCQYQSTNCTSTDLCSVGK
CNNQTGSCEFSPVVCQDPPPCYKSM---

---FLGPIPRIHFPCPSHLLTPWFSKPVGLWPETSGKLSISGKFTWPKSLQSLGMNPMGC
IASLGWKMPISVN*lhiirsyvqlenvltklvlvnslq*fvqntlilv*nhwvvilqlve
nvnisqlivhqpihvqlenvitklvlvnslq*fvqliqtlv*nq*vvilqlenvnisqli
vhqpiyvqlenvitklvpvnflq*fakihhhainlwvvsmadadm*tlvivkpllnf*rl
nsik*inkkkikknf*


Translated Amino Acid sequence (All Frames)
Frame A:
ldsvntdhyhvlhhlthvlkqldvtklveivhirkslvqitpilv*nqwvvllhlvedan
isqliahhpiyvqlenvitklvlvnslq*fvqntlilv*nhwvvilqlvenvnisqlivh
qpihvqlenvitklvlvnslq*fvqliqtlv*nq*vvilqlenvnisqlivhqpiyvqle
nvitklvpvnflq*fakihhhainlw---

---vswvqfpgstshvppif*phgsqsqldcgrklvencpypgnslgpnhsnplv*iqwv
vllhlggrcqyqsinctssdpmfswkmy*pnwfl*ilssslsktl*slyeiigl*fynww
kmsisvn*lyinrsmfnwkm**pnwfl*ilssslsnsfkplyeinrl*ffnwkmsisvn*
lyinrsmfswkm**pnwfl*ifssslprsttml*iyglcqwqmrickhw*llnhslifkg
*tl*nk*ikkk*kkif

Frame B:
wilsiqittmssii*pmfssswm*rn*wklyisenhlskslqslyeinglycftwwkmpi
svn*lhiirsmfswkm**pnwfl*ilssslsktl*slyeiigl*fynwwkmsisvn*lyi
nrsmfnwkm**pnwfl*ilssslsnsfkplyeinrl*ffnwkmsisvn*lyinrsmfswk
m**pnwfl*ifssslprsttml*iy---

---fpgsnsqdplpmslpssdpmvlkaswivagn*wkivhireihlaqitpipwyesngl
ycftwvedanisqliahhpilcsvgkcinqtgscefspvvcpkhsnpcmkslgcnstigg
kcqyqsidctstdpcsigkcnnqtgscefspvvcpthsnpcmksigcnssigkcqyqstn
ctstdlcsvgkcnnqtgscefspvvcqdpppcyksmgcvngrcgyvntgdc*ttp*flkv
klykink*kknkkkfl

Frame C:
GFCQYRSLPCPPSSDPCSQAVGCDETSGNCTYQKITCPNHSNPCMKSMGCIASLGGRCQY
QSINCTSSDLCSVGKCNNQTGSCEFSPVVCPKHSNPCMKSLGCNSTIGGKCQYQSIDCTS
TDPCSIGKCNNQTGSCEFSPVVCPTHSNPCMKSIGCNSSIGKCQYQSTNCTSTDLCSVGK
CNNQTGSCEFSPVVCQDPPPCYKSM---

---FLGPIPRIHFPCPSHLLTPWFSKPVGLWPETSGKLSISGKFTWPKSLQSLGMNPMGC
IASLGWKMPISVN*lhiirsyvqlenvltklvlvnslq*fvqntlilv*nhwvvilqlve
nvnisqlivhqpihvqlenvitklvlvnslq*fvqliqtlv*nq*vvilqlenvnisqli
vhqpiyvqlenvitklvpvnflq*fakihhhainlwvvsmadadm*tlvivkpllnf*rl
nsik*inkkkikknf*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL851 (SSL851Q) /CSM/SS/SSL8-C/SSL851Q.Seq.d/ 2611 0.0
SLE145 (SLE145Q) /CSM/SL/SLE1-B/SLE145Q.Seq.d/ 1225 0.0
SLH758 (SLH758Q) /CSM/SL/SLH7-C/SLH758Q.Seq.d/ 1078 0.0
SLF182 (SLF182Q) /CSM/SL/SLF1-D/SLF182Q.Seq.d/ 1005 0.0
VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/ 38 0.35
VSC414 (VSC414Q) /CSM/VS/VSC4-A/VSC414Q.Seq.d/ 38 0.35
FC-IC0597 (FC-IC0597Q) /CSM/FC-IC/FC-IC0597Q.Seq.d/ 36 1.4
VFN210 (VFN210Q) /CSM/VF/VFN2-A/VFN210Q.Seq.d/ 34 5.5
VFK415 (VFK415Q) /CSM/VF/VFK4-A/VFK415Q.Seq.d/ 34 5.5
VFD265 (VFD265Q) /CSM/VF/VFD2-C/VFD265Q.Seq.d/ 34 5.5

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU494978|BU494978.1 PfESToab82c12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5' similar to TR:O97289 O97289 PFC0950C PROTEIN. ;, mRNA sequence. 26 1.0 4
AC120659|AC120659.4 Rattus norvegicus clone CH230-35G21, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 1.2 1
BZ883775|BZ883775.1 CH240_189E12.TJ CHORI-240 Bos taurus genomic clone CH240_189E12, DNA sequence. 36 1.7 2
AI907930|AI907930.1 IL-BT157-080399-003 BT157 Homo sapiens cDNA, mRNA sequence. 26 3.1 4
AC016004|AC016004.3 Homo sapiens clone RP11-23M3, LOW-PASS SEQUENCE SAMPLING. 38 3.1 3
AL118557|AL118557.5 Human chromosome 14 DNA sequence BAC R-1033H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 44 4.6 1
U64858|U64858.1 Caenorhabditis elegans cosmid C16D9. 44 4.6 1
AC024270|AC024270.6 Homo sapiens chromosome 15, clone RP11-382A20, complete sequence. 44 4.6 1
AC104845|AC104845.1 Oryza sativa chromosome 11 clone OSJNBb0091E08, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces. 44 4.6 1
AQ342525|AQ342525.1 RPCI11-113J7.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-113J7, genomic survey sequence. 44 4.6 1
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 131 5e-29
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 130 1e-28
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 113 2e-23
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 107 1e-21
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 97 1e-18
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 89 4e-16
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 87 2e-15
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 80 1e-13
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 80 2e-13
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 78 7e-13
protein update 2009. 6.15
PSORT

psg: 0.82 gvh: 0.46 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSL851 is cyt

5' end seq. ID SSL851F
5' end seq.
>SSL851F.Seq
CTGGATTCTGTCAATACAGATCACTACCATGTCCTCCATCATCTGACCCATGTTCTCAAG
CAGTTGGATGTGACGAAACTAGTGGAAATTGTACATATCAGAAAATCACTTGTCCAAATC
ACTCCAATCCTTGTATGAAATCAATGGGTTGTATTGCTTCACTTGGTGGAAGATGCCAAT
ATCAGTCAATTAATTGCACATCATCCGATCTATGTTCAGTTGGAAAATGTAATAACCAAA
CTGGTTCTTGTGAATTCTCTCCAGTAGTTTGTCCAAAACACTCTAATCCTTGTATGAAAT
CATTGGGTTGTAATTCTACAATTGGTGGAAAATGTCAATATCAGTCAATTGATTGTACAT
CAACCGATCCATGTTCAATTGGAAAATGTAATAACCAAACTGGTTCTTGTGAATTCTCTC
CAGTAGTTTGTCCAACTCATTCAAACCCTTGTATGAAATCAATAGGTTGTAATTCTTCAA
TTGGAAAATGTCAATATCAGTCAACTAATTGTACATCAACCGATCTATGTTCAGTTGGAA
AATGTAATAACCAAACTGGTTCCTGTGAATTTTCTCCAGTAGTTTGCCAAGATCCACCAC
CATGCTATAAATCTATGG----------
Length of 5' end seq. 618
3' end seq. ID SSL851Z
3' end seq.
>SSL851Z.Seq
----------GTTTCCTGGGTCCAATTCCCAGGATCCACTTCCCATGTCCCTCCCATCTT
CTGACCCCATGGTTCTCAAAGCCAGTTGGATTGTGGCCGGAAACTAGTGGAAAATTGTCC
ATATCCGGGAAATTCACTTGGCCCAAATCACTCCAATCCCTTGGTATGAATCCAATGGGT
TGTATTGCTTCACTTGGGTGGAAGATGCCAATATCAGTCAATTAATTGCACATCATCCGA
TCCTATGTTCAGTTGGAAAATGTATTAACCAAACTGGTTCTTGTGAATTCTCTCCAGTAG
TTTGTCCAAAACACTCTAATCCTTGTATGAAATCATTGGGTTGTAATTCTACAATTGGTG
GAAAATGTCAATATCAGTCAATTGATTGTACATCAACCGATCCATGTTCAATTGGAAAAT
GTAATAACCAAACTGGTTCTTGTGAATTCTCTCCAGTAGTTTGTCCAACTCATTCAAACC
CTTGTATGAAATCAATAGGTTGTAATTCTTCAATTGGAAAATGTCAATATCAGTCAACTA
ATTGTACATCAACCGATCTATGTTCAGTTGGAAAATGTAATAACCAAACTGGTTCCTGTG
AATTTTCTCCAGTAGTTTGCCAAGATCCACCACCATGCTATAAATCTATGGGTTGTGTCA
ATGGCAGATGCGGATATGTAAACACTGGTGATTGTTAAACCACTCCTTAATTTTTAAAGG
TTAAACTCTATAAAATAAATAAATAAAAAAAAAATAAAAAAAAATTTTTAA
Length of 3' end seq. 761
Connected seq. ID SSL851P
Connected seq.
>SSL851P.Seq
CTGGATTCTGTCAATACAGATCACTACCATGTCCTCCATCATCTGACCCATGTTCTCAAG
CAGTTGGATGTGACGAAACTAGTGGAAATTGTACATATCAGAAAATCACTTGTCCAAATC
ACTCCAATCCTTGTATGAAATCAATGGGTTGTATTGCTTCACTTGGTGGAAGATGCCAAT
ATCAGTCAATTAATTGCACATCATCCGATCTATGTTCAGTTGGAAAATGTAATAACCAAA
CTGGTTCTTGTGAATTCTCTCCAGTAGTTTGTCCAAAACACTCTAATCCTTGTATGAAAT
CATTGGGTTGTAATTCTACAATTGGTGGAAAATGTCAATATCAGTCAATTGATTGTACAT
CAACCGATCCATGTTCAATTGGAAAATGTAATAACCAAACTGGTTCTTGTGAATTCTCTC
CAGTAGTTTGTCCAACTCATTCAAACCCTTGTATGAAATCAATAGGTTGTAATTCTTCAA
TTGGAAAATGTCAATATCAGTCAACTAATTGTACATCAACCGATCTATGTTCAGTTGGAA
AATGTAATAACCAAACTGGTTCCTGTGAATTTTCTCCAGTAGTTTGCCAAGATCCACCAC
CATGCTATAAATCTATGG----------GTTTCCTGGGTCCAATTCCCAGGATCCACTTC
CCATGTCCCTCCCATCTTCTGACCCCATGGTTCTCAAAGCCAGTTGGATTGTGGCCGGAA
ACTAGTGGAAAATTGTCCATATCCGGGAAATTCACTTGGCCCAAATCACTCCAATCCCTT
GGTATGAATCCAATGGGTTGTATTGCTTCACTTGGGTGGAAGATGCCAATATCAGTCAAT
TAATTGCACATCATCCGATCCTATGTTCAGTTGGAAAATGTATTAACCAAACTGGTTCTT
GTGAATTCTCTCCAGTAGTTTGTCCAAAACACTCTAATCCTTGTATGAAATCATTGGGTT
GTAATTCTACAATTGGTGGAAAATGTCAATATCAGTCAATTGATTGTACATCAACCGATC
CATGTTCAATTGGAAAATGTAATAACCAAACTGGTTCTTGTGAATTCTCTCCAGTAGTTT
GTCCAACTCATTCAAACCCTTGTATGAAATCAATAGGTTGTAATTCTTCAATTGGAAAAT
GTCAATATCAGTCAACTAATTGTACATCAACCGATCTATGTTCAGTTGGAAAATGTAATA
ACCAAACTGGTTCCTGTGAATTTTCTCCAGTAGTTTGCCAAGATCCACCACCATGCTATA
AATCTATGGGTTGTGTCAATGGCAGATGCGGATATGTAAACACTGGTGATTGTTAAACCA
CTCCTTAATTTTTAAAGGTTAAACTCTATAAAATAAATAAATAAAAAAAAAATAAAAAAA
AATTTTTAA
Length of connected seq. 1379
Full length Seq ID -
Full length Seq. -
Length of full length seq. -