SSL840
Library SS
(Link to library)
Clone ID SSL840
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15031-1
Original site URL
Representative seq. ID SSL840E
(Link to Original site)
Representative DNA sequence
>SSL840 (SSL840Q) /CSM/SS/SSL8-B/SSL840Q.Seq.d/
ATACTCTGGTGTTGCCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCATT
ATTGAGATGTCGTGCTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACTT
CTTAAAGAAATGCAGAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCCT
CGTCAAAACCCACGCTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTGG
TATCTACAACGGTAAAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACTA
CACTGGTGAATTCTCACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTGC
TACTCACTCTTCAAGATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTTT
GTTTTAAAATAATAAAGTGATAAAGTTATAAACAGTAAAAAAAAAAAAAA
sequence update 1998. 2.24
Translated Amino Acid sequence
YSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPAL
VKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGA
THSSRFIPLK*ifyislvalf*nnkvikl*tvkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ilwcclresp*lkgrtinfiiemscs*kvkt*npnqtrqllkemqslksrrypsr*ktsp
rqnprs*hfncsrndrfchwylqr*sfqss*s*trndwslhw*iltliqecqpwssrywc
yslfkihpievdflyiscsfvlk**sdkvinskkkk


Frame B:
YSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPAL
VKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGA
THSSRFIPLK*ifyislvalf*nnkvikl*tvkkkk


Frame C:
tlvlp*rvslt*rknn*fhy*dvvlves*dvkpqsntsts*rnaepqkpplpksvknqps
skptlvtf*lfqk*svlslvsttvkfsiklklnqk*lvttlvnshshtrvstmvvqvlvl
ltlqdssh*srffiyll*lcfkiik**sykq*kkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH654 (VSH654Q) /CSM/VS/VSH6-C/VSH654Q.Seq.d/ 904 0.0
VSH225 (VSH225Q) /CSM/VS/VSH2-B/VSH225Q.Seq.d/ 904 0.0
VSG650 (VSG650Q) /CSM/VS/VSG6-C/VSG650Q.Seq.d/ 904 0.0
VSF361 (VSF361Q) /CSM/VS/VSF3-C/VSF361Q.Seq.d/ 904 0.0
VSE759 (VSE759Q) /CSM/VS/VSE7-C/VSE759Q.Seq.d/ 904 0.0
VSE648 (VSE648Q) /CSM/VS/VSE6-B/VSE648Q.Seq.d/ 904 0.0
VSE495 (VSE495Q) /CSM/VS/VSE4-D/VSE495Q.Seq.d/ 904 0.0
VSE131 (VSE131Q) /CSM/VS/VSE1-B/VSE131Q.Seq.d/ 904 0.0
VSD279 (VSD279Q) /CSM/VS/VSD2-D/VSD279Q.Seq.d/ 904 0.0
VSC411 (VSC411Q) /CSM/VS/VSC4-A/VSC411Q.Seq.d/ 904 0.0

own update 2003. 6.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

T37532|T37532.1 EST102680 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 96 6e-19 3
T37414|T37414.1 EST102534 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 96 7e-19 3
D11386|D11386.1 Saccharomyces cerevisiae mRNA for ribosomal protein S21, complete cds. 96 1e-18 3
AL400252|AL400252.1 T3 end of clone AS0AA020E04 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 101 8e-18 1
Z74782|Z74782.1 S.cerevisiae chromosome XV reading frame ORF YOL040c. 96 9e-18 3
D11387|D11387.1 Saccharomyces cerevisiae gene for ribosomal protein S21, complete cds. 96 9e-18 3
T37264|T37264.1 EST102356 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 90 3e-17 3
BI126497|BI126497.1 I076P40P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence. 64 6e-16 2
CB083063|CB083063.1 hn65h03.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hn65h03, mRNA sequence. 76 2e-15 2
BM077526|BM077526.1 pb18f11.y1 Ancylostoma caninum L3 SS SL1 TOPO v1 Murphy Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:Q9XVP0 Q9XVP0 F36A2.6 PROTEIN. [1] ;, mRNA sequence. 70 3e-14 2
dna update 2003. 8.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY741683_1(AY741683|pid:none) Aedes aegypti 40S ribosomal protei... 155 3e-37
EU195429_1(EU195429|pid:none) Mucor racemosus strain PTCC 5305 p... 154 9e-37
FN357319_6(FN357319|pid:none) Schistosoma mansoni genome sequenc... 152 3e-36
AY620991_1(AY620991|pid:none) Branchiostoma belcheri tsingtaunes... 152 5e-36
AM048956_1(AM048956|pid:none) Eucinetus sp. APV-2005 mRNA for ri... 151 6e-36
(O94715) RecName: Full=40S ribosomal protein S15-A; &AL035592_3... 151 6e-36
FN323351_1(FN323351|pid:none) Schistosoma japonicum isolate Anhu... 151 8e-36
FN316407_1(FN316407|pid:none) Schistosoma japonicum isolate Anhu... 150 2e-35
BT083676_1(BT083676|pid:none) Zea mays full-length cDNA clone ZM... 150 2e-35
AF526224_1(AF526224|pid:none) Argopecten irradians isolate iolsa... 149 2e-35
protein update 2009. 7. 9
PSORT

psg: 0.75 gvh: 0.37 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSL840 is cyt

5' end seq. ID SSL840F
5' end seq.
>SSL840F.Seq
ATACTCTGGTGTTGCCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCATT
ATTGAGATGTCGTGCTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACTT
CTTAAAGAAATGCAGAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCCT
CGTCAAAACCCACGCTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTGG
TATCTACAACGGTAAAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACTA
CACTGGTGAATTCTCACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTGC
TACTCACTCTTCAAGATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTTT
GTTTTAAAATAAGAAAGTGATAAAGTTATAAACAGTAA----------
Length of 5' end seq. 458
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSL840E
Full length Seq.
>SSL840E.Seq
ATACTCTGGTGTTGCCTTAGAGAGTCTCCTTGACTTAAAGGAAGAACAATTAATTTCATT
ATTGAGATGTCGTGCTCGTAGAAAGTTAAGACGTGAAACCCCAATCAAACACGTCAACTT
CTTAAAGAAATGCAGAGCCTCAAAAGCCGCCGTTACCCAAGTCGGTGAAAAACCAGCCCT
CGTCAAAACCCACGCTCGTAACATTTTAATTGTTCCAGAAATGATCGGTTCTGTCATTGG
TATCTACAACGGTAAAGTTTTCAATCAAGTTGAAGTTAAACCAGAAATGATTGGTCACTA
CACTGGTGAATTCTCACTCTCATACAAGAGTGTCAACCATGGTCGTCCAGGTATTGGTGC
TACTCACTCTTCAAGATTCATCCCATTGAAGTAGATTTTTTATATATCTCTTGTAGCTTT
GTTTTAAAATAATAAAGTGATAAAGTTATAAACAGTAAAAAAAAAAAAAA
Length of full length seq. 470