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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL803
Library SS
(Link to library)
Clone ID SSL803
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID SSL803Z
(Link to Original site)
Representative DNA sequence 
>SSL803 (SSL803Q) /CSM/SS/SSL8-A/SSL803Q.Seq.d/
XXXXXXXXXXCTTTGGCCNTTTGGGAGGTGGGGAACGGTCCGGGGGTTCCCAATTGGGTT
ACCCCCTTATGGGTTAGGTTTCCGTCCCAACCTTGGGTAGGGGATTTTCGCCCATTGGGA
AGAAGGAGGTTTTTTCACACTCCTCGTAGATGGGTCCGGTATGTTTTTGTCTGGGTTGCA
TTTTCCTTTTCGGCTCTTATTCAGGGTCCCTATTGGTACTCTCCCCCGGATCTGTTCATA
CCGCTTTACAAATCCCCCAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTCTCAATCC
CTGGTTTAGAATTTGCCTATGCAAATTCCCCCCGTTCTATGAAATCATTGGTAATTGCCG
GTTGGTTCATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
GATTCCCGGAATATGTTTTCTCATTATTATTTGGTTCTGTAATGTTTGTATTCCCCTTTA
CCTTTACCATTATGTGCCTATGGATTCAGGGAATTTGCTCACTCGGTTTTGGATGAATTA
AATGGTGATCCTCCAATGGCTGATGATAATGCTAATGCTAATTCCAAGGAATTGGATGTT
GTAACTCAAAAGGATTTATCATCTTCTTCAAATCCAATTTTTAATAATAATAACAATAAT
AATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAA
TCAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAAAAAAAAATAAAAAAATA
AAAATAAAAATAAAAATAATTATAAATTTAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 2.21
Translated Amino Acid sequence 
---fgxlgggersggsqlgyplmg*vsvptlgrgfspigkkevfshss*MGPVCFCLGCI
FLFGSYSGSLLVLSPGSVHTALQIPQYVVLTAAEVLFSIPGLEFAYANSPRSMKSLVIAG
WFICVSIGNMFDAFVIELIGFPEYVFSLLFGSVMFVFPFTFTIMCLWIQGICSLGFG*ik
w*ssng***c*c*fqgigccnskgfiiffksnf****q***lnfg**y*lwl*s*kikli
nlkiktlcily*ekkk*knknknknnykfkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---fgxlgggersggsqlgyplmg*vsvptlgrgfspigkkevfshss*MGPVCFCLGCI
FLFGSYSGSLLVLSPGSVHTALQIPQYVVLTAAEVLFSIPGLEFAYANSPRSMKSLVIAG
WFICVSIGNMFDAFVIELIGFPEYVFSLLFGSVMFVFPFTFTIMCLWIQGICSLGFG*ik
w*ssng***c*c*fqgigccnskgfiiffksnf****q***lnfg**y*lwl*s*kikli
nlkiktlcily*ekkk*knknknknnykfkkkkkkkk


Frame B:
---laxwevgngpgvpnwvtplwvrfpsqpwvgdfrplgrrrffhtprrwvryvfvwvaf
sfsaliqgpywysppdlfiplykspnmls*lplkfysqslv*nlpmqippvl*nhw*lpv
gsfvfplviclmll*ln*ldsrnmfshyylvl*clysplplplcaygfrefahsvldeln
gdppmaddnananskeldvvtqkdlssssnpifnnnnnnnnstlgnsidygydheksn*s
i*k*khfvfyikkkknkkikikikiiinlkkkkkkk


Frame C:
---wpfgrwgtvrgfpiglppyglgfrpnlg*gifahweeggfftllvdgsgmflsglhf
pfrllfrvpigtlpricsyrftnppiccldcr*sfilnpwfriclckfppfyeiigncrl
vhlcfhw*yv*cfcn*inwipgicfliiiwfcnvciplylyhyvpmdsgnlltrfwmn*m
vilqwlmimlmliprnwml*lkriyhllqiqfliiitiiitqlwvivlimvmimknqinq
fknkntlyfilrkkkikk*k*k*k*l*i*kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL803 (SSL803Q) /CSM/SS/SSL8-A/SSL803Q.Seq.d/                       1245   0.0
SSI574 (SSI574Q) /CSM/SS/SSI5-D/SSI574Q.Seq.d/                        577   e-163
SSF815 (SSF815Q) /CSM/SS/SSF8-A/SSF815Q.Seq.d/                        569   e-161
VFG511 (VFG511Q) /CSM/VF/VFG5-A/VFG511Q.Seq.d/                        565   e-160
VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/                        565   e-160
VFA693 (VFA693Q) /CSM/VF/VFA6-D/VFA693Q.Seq.d/                        565   e-160
SSL138 (SSL138Q) /CSM/SS/SSL1-B/SSL138Q.Seq.d/                        565   e-160
SSK896 (SSK896Q) /CSM/SS/SSK8-D/SSK896Q.Seq.d/                        565   e-160
SSJ806 (SSJ806Q) /CSM/SS/SSJ8-A/SSJ806Q.Seq.d/                        565   e-160
SSI451 (SSI451Q) /CSM/SS/SSI4-C/SSI451Q.Seq.d/                        565   e-160
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   381  e-169  5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    94  2e-12  5
AP005113|AP005113.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.003  2
AC110914|AC110914.2 Mus musculus clone RP24-401F19, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  2.8  1
AP004179|AP004179.1 Oryza sativa genomic DNA, chromosome 2, BAC clone:OJ1124_G07, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  2.8  1
CC179870|CC179870.1 SALK_073739.54.50.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_073739.54.50.x, DNA sequence.    44  2.8  1
AY084697|AY084697.1 Arabidopsis thaliana clone 115372 mRNA, complete sequence.    44  2.8  1
AL132965|AL132965.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T16K5.    44  2.8  1
AC110911|AC110911.2 Mus musculus clone RP24-357A15, WORKING DRAFT SEQUENCE, 17 unordered pieces.    44  2.8  1
AZ379258|AZ379258.1 1M0134E20F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0134E20 F, DNA sequence.    44  2.8  1
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   147   3e-34
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ...    84   6e-15
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ...    84   6e-15
(Q9ES07) RecName: Full=Solute carrier family 15 member 2; AltNam...    78   4e-13
AF111811_1(AF111811|pid:none) Mus musculus proton-dependent high...    78   4e-13
(Q9JIP7) RecName: Full=Solute carrier family 15 member 1; AltNam...    77   9e-13
AK136428_1(AK136428|pid:none) Mus musculus adult male colon cDNA...    77   9e-13
AY860424_1(AY860424|pid:none) Rattus norvegicus pineal gland-spe...    77   9e-13
BC054967_1(BC054967|pid:none) Xenopus laevis solute carrier fami...    77   9e-13
(P51574) RecName: Full=Solute carrier family 15 member 1; AltNam...    77   9e-13
protein update 2009. 6.15
PSORT 

 psg: 0.97  gvh: 0.69  alm: 0.28  top: 0.50  tms: 0.20  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SSL803 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL803Z
3' end seq. 
>SSL803Z.Seq
----------CTTTGGCCNTTTGGGAGGTGGGGAACGGTCCGGGGGTTCCCAATTGGGTT
ACCCCCTTATGGGTTAGGTTTCCGTCCCAACCTTGGGTAGGGGATTTTCGCCCATTGGGA
AGAAGGAGGTTTTTTCACACTCCTCGTAGATGGGTCCGGTATGTTTTTGTCTGGGTTGCA
TTTTCCTTTTCGGCTCTTATTCAGGGTCCCTATTGGTACTCTCCCCCGGATCTGTTCATA
CCGCTTTACAAATCCCCCAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTCTCAATCC
CTGGTTTAGAATTTGCCTATGCAAATTCCCCCCGTTCTATGAAATCATTGGTAATTGCCG
GTTGGTTCATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
GATTCCCGGAATATGTTTTCTCATTATTATTTGGTTCTGTAATGTTTGTATTCCCCTTTA
CCTTTACCATTATGTGCCTATGGATTCAGGGAATTTGCTCACTCGGTTTTGGATGAATTA
AATGGTGATCCTCCAATGGCTGATGATAATGCTAATGCTAATTCCAAGGAATTGGATGTT
GTAACTCAAAAGGATTTATCATCTTCTTCAAATCCAATTTTTAATAATAATAACAATAAT
AATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAA
TCAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAAAAAAAAATAAAAAAATA
AAAATAAAAATAAAAATAATTATAAATTTAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 823
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -