SSL782
Library SS
(Link to library)
Clone ID SSL782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01601-1
Original site URL
Representative seq. ID SSL782Z
(Link to Original site)
Representative DNA sequence
>SSL782 (SSL782Q) /CSM/SS/SSL7-D/SSL782Q.Seq.d/
XXXXXXXXXXGTCCCCCNCCCCATNACTGGGCGTTTTCCCACAGGGGGTTACCCACACGA
TTTGCCCCCCCAATGGNCATTACTCACAGCTGCTGANGGGGATAACATCCAGAGGGGACC
AGGTATCCCACACCTCCGAGGTAGGCTCCATTTACTGGCATCCTATTTCCACTCCTACAT
GGGCCTTACCATTAATGGGGTTTATCGGGTTTCGCGAATAGCGGACCTGGTATAATTTTT
CCTTACCTGGGGTTTATTACATTTGTTTAATGCATACTCTTTCTTTTTGGAAAGTTTTTT
AATATTCTCATAAACACAAGGGCATTTTTAACAATCTAACCAATCAATTCTTATTTAGGG
ATGTTATATTTTCAACAAACTTAATTGGTGAAAACGGAAGTGTTCTAAGTGTCTGGTTTT
TTGGGAAGAATTATTTTCTTAATTTTACCATTCTTTATACAATTGAATGTAATCTCCGAT
AAAAATCCATCTATAAATCCCTTTATTGTTGGTTATTTANTCATTGCAATCTTTATTTTA
GTTTGGTTTAGTATTTTAAAAACTTTAGTTATGTTTTCAAAGTATAAATATTTAGTAATT
GAACCAAATCAAACAATAGATTGTAATAAATTATTTTTATTGGAATCACTCGTTATCTCT
TATAACTCACCAATTAATGAAAATTCATTATTTGAACACACTCAAATCACACCAGGAAAT
ATCTTACCATTTTATCAAGTACCTTTATTACCAAAAGTTTAAACATTAAAAGAGAAAGAA
AAAAAAAAAAAAAAAA
sequence update 1998. 2.13
Translated Amino Acid sequence
---ppphxwafshrglptrfappmxithsc*xg*hpegtryptppr*apftgilfpllhg
pyh*wglsgfansgpgiifpylgfitfv*cilflfgkffnilintraflti*pinsylgm
lyfqqt*lvktevf*VSGFLGRIIFLILPFFIQLNVISDKNPSINPFIVGYLXIAIFILV
WFSILKTLVMFSKYKYLVIEPNQTIDCNKLFLLESLVISYNSPINENSLFEHTQITPGNI
LPFYQVPLLPKV*tlkekekkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---spxpxlgvfpqgvthticppnghysqllxgitsrgdqvshtsevgsiywhpistptw
alplmgfigfre*rtwynfslpgvyyiclmhtlsfwkvf*yshkhkgifnnltnqflfrd
vifstnligengsvlsvwffgknyflnftilytiecnlr*ksiykslycwlfxhcnlyfs
lv*yfknfsyvfkv*ifsn*tksnnrl**iifigitryll*ltn**kfii*thsnhtrky
ltilsstfitkslnikrerkkkkk


Frame B:
---ppphxwafshrglptrfappmxithsc*xg*hpegtryptppr*apftgilfpllhg
pyh*wglsgfansgpgiifpylgfitfv*cilflfgkffnilintraflti*pinsylgm
lyfqqt*lvktevf*VSGFLGRIIFLILPFFIQLNVISDKNPSINPFIVGYLXIAIFILV
WFSILKTLVMFSKYKYLVIEPNQTIDCNKLFLLESLVISYNSPINENSLFEHTQITPGNI
LPFYQVPLLPKV*tlkekekkkkk


Frame C:
---pxpxtgrfptggyphdlppqwxlltaaxgdniqrgpgiphlrgrlhllasyfhsymg
ltingvyrvsriadlv*ffltwgllhlfnaysfflesflifs*tqghf*qsnqsili*gc
yifnklnw*krkcskclvfweelfs*fyhslyn*m*spikihl*iplllvixslqslf*f
glvf*kl*lcfqsini**lnqikq*ivinyfywnhslslithqlmkihylntlkshqeis
yhfikylyyqkfkh*krkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL782 (SSL782Q) /CSM/SS/SSL7-D/SSL782Q.Seq.d/ 1433 0.0
SSK291 (SSK291Q) /CSM/SS/SSK2-D/SSK291Q.Seq.d/ 839 0.0
SSI652 (SSI652Q) /CSM/SS/SSI6-C/SSI652Q.Seq.d/ 835 0.0
SSF335 (SSF335Q) /CSM/SS/SSF3-B/SSF335Q.Seq.d/ 835 0.0
SSG275 (SSG275Q) /CSM/SS/SSG2-D/SSG275Q.Seq.d/ 825 0.0
SSA460 (SSA460Q) /CSM/SS/SSA4-C/SSA460Q.Seq.d/ 821 0.0
SSE421 (SSE421Q) /CSM/SS/SSE4-A/SSE421Q.Seq.d/ 795 0.0
SSC579 (SSC579Q) /CSM/SS/SSC5-D/SSC579Q.Seq.d/ 789 0.0
SSD191 (SSD191Q) /CSM/SS/SSD1-D/SSD191Q.Seq.d/ 787 0.0
SSC620 (SSC620Q) /CSM/SS/SSC6-A/SSC620Q.Seq.d/ 722 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 44 0.007 6
AX767496|AX767496.1 Sequence 144 from Patent WO03044226. 32 0.049 5
AX599038|AX599038.1 Sequence 378 from Patent WO02077272. 32 0.049 5
AX598910|AX598910.1 Sequence 250 from Patent WO02077272. 32 0.049 5
AJ293032|AJ293032.1 Atheta vestita mitochondrial partial coi gene for cytochrome oxidase I and partial coii gene for cytochrome oxidase II. 36 0.13 3
AZ633493|AZ633493.1 1M0488I13R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0488I13 R, DNA sequence. 32 0.15 3
Z81469|Z81469.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone C13F7. 34 0.33 4
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 34 0.34 7
BZ696875|BZ696875.1 SP__Ba0089O17.f SP__Ba Sorghum propinquum genomic clone SP__Ba0089O17 5', genomic survey sequence. 32 0.58 4
AC096420|AC096420.6 Rattus norvegicus clone CH230-17H24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 42 0.59 4
dna update 2003. 8.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ010592_66(AJ010592|pid:none) Guillardia theta DNA for complete... 35 2.1

protein update 2009. 2. 3
PSORT

psg: 0.99 gvh: 0.51 alm: 0.22 top: 0.40 tms: 0.13 mit: 0.33 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
24.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for SSL782 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL782Z
3' end seq.
>SSL782Z.Seq
----------GTCCCCCNCCCCATNACTGGGCGTTTTCCCACAGGGGGTTACCCACACGA
TTTGCCCCCCCAATGGNCATTACTCACAGCTGCTGANGGGGATAACATCCAGAGGGGACC
AGGTATCCCACACCTCCGAGGTAGGCTCCATTTACTGGCATCCTATTTCCACTCCTACAT
GGGCCTTACCATTAATGGGGTTTATCGGGTTTCGCGAATAGCGGACCTGGTATAATTTTT
CCTTACCTGGGGTTTATTACATTTGTTTAATGCATACTCTTTCTTTTTGGAAAGTTTTTT
AATATTCTCATAAACACAAGGGCATTTTTAACAATCTAACCAATCAATTCTTATTTAGGG
ATGTTATATTTTCAACAAACTTAATTGGTGAAAACGGAAGTGTTCTAAGTGTCTGGTTTT
TTGGGAAGAATTATTTTCTTAATTTTACCATTCTTTATACAATTGAATGTAATCTCCGAT
AAAAATCCATCTATAAATCCCTTTATTGTTGGTTATTTANTCATTGCAATCTTTATTTTA
GTTTGGTTTAGTATTTTAAAAACTTTAGTTATGTTTTCAAAGTATAAATATTTAGTAATT
GAACCAAATCAAACAATAGATTGTAATAAATTATTTTTATTGGAATCACTCGTTATCTCT
TATAACTCACCAATTAATGAAAATTCATTATTTGAACACACTCAAATCACACCAGGAAAT
ATCTTACCATTTTATCAAGTACCTTTATTACCAAAAGTTTAAACATTAAAAGAGAAAGAA
AAAAAAAAAAAAAAAA
Length of 3' end seq. 786
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -