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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL761
Library SS
(Link to library)
Clone ID SSL761
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15623-1
Original site URL
Representative seq. ID SSL761P
(Link to Original site)
Representative DNA sequence 
>SSL761 (SSL761Q) /CSM/SS/SSL7-C/SSL761Q.Seq.d/
ATTTATTTTTTATTTTTTTAAAAAAAAAAACATTTGTAGTGTTTAATTTTTATAAATAAT
TTTTTATACCCTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTT
ATTTTTTGTGGTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAAT
CGAATTTTTAGAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGAT
GGTGAATCAATGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGAT
CAATATTTAACACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAA
AGCGAAGGTGTAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTA
TATTGCTCTGGTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAG
TTATTGGATGTTGTGTTGAAAAAGTGTCCAAAAGGATTTTCATTTTTTGGTTCAATTGGA
TGTGATGATTTCATTAAAAACTATTCAAAGAAATATCCAGATGTTGAAATTGGTGGTCGT
CATACAGACTCTTTTACATTATTTGGXXXXXXXXXXTAAATCACCACTCCCATTTCACAC
ATCTGTTATTGTTGTGCTACGAGTGCTTTGAAAATACNGGGTATTGAATTTAATGGATTT
TCATTCAGCATTCCGACTTATACATCGTCAAATGGTAAAATCTATAATGAGGCTACAGCC
ATTCAACATATTTCGAAGTATCAGAGATTGTCTTTGTACTAAAGTTGCTATTGAAGATAT
ATTAGGAACACTGGACTCAAATGGTAANGAGCAAAGTCATATTTGTTGATTATCGCCGCA
CCCAATTGGTTCCCCTTATATGTTTGAAATTGTAAAAACTTTTAAATCGGGCCGNTTTTC
ACGACGAACTTCAAATATGGAAAATAGGCCCAGTGTCAATGGCACTTTCCTCGTTAAATA
AAACCAGTAATGCCAATATTCATTTTAATGAAATTTTAGAAATTTTAAAGGGAGANTTAT
GGGTNTAATAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCCTCCT
CCTCCCCCCCCCCGTGGTGGTGATAATAATAATAATAATAATAATAATAAGATTACACAA
TAATTAAAATAAAAATAAAATAAAAAAAAAATAAAAATTAAACACCACTAAAAAAATTAA
GTATAAATAAAAAATAAATAAAAAATAAATGAAATAATAAAAAAAA
sequence update 1998.12.24
Translated Amino Acid sequence 
iyflff*kkkhl*clifinnflypck*FKMNSYDNSSIVFIFCGQATLWKTMALELYSGN
RIFRESMDRIDNYLKINYFDGESMLNKLRSLGDDESPNKDQYLTHSVLFMFQVSLFELYK
SEGVNPSFIYGVSCGEMASLYCSGALTLKSACDLIMDRAKLLDVVLKKCPKGFSFFGSIG
CDDFIKNYSKKYPDVEIGGRHTDSFTLF---

---NHHSHFTHLLLLCYECFENTGY*i*wifiqhsdlyivkw*nl**gyshstyfevsei
vfvlklllkiy*ehwtqmvxskvifvdyrrtqlvpliclkl*kllnraxfhdelqiwkig
pvsmalsslnktsnanihfneileilkgxlwv**wwwwwwwwwwwwwwsssspppww***
*******dytiikikik*kknkn*tplkklsinkk*iknk*nnkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyflff*kkkhl*clifinnflypck*FKMNSYDNSSIVFIFCGQATLWKTMALELYSGN
RIFRESMDRIDNYLKINYFDGESMLNKLRSLGDDESPNKDQYLTHSVLFMFQVSLFELYK
SEGVNPSFIYGVSCGEMASLYCSGALTLKSACDLIMDRAKLLDVVLKKCPKGFSFFGSIG
CDDFIKNYSKKYPDVEIGGRHTDSFTLF---

---*ittpishicyccatsalkixgiefngfsfsiptytssngkiyneataiqhiskyqr
lsly*scy*ryirntglkw*xaksylliiaapnwfplyv*ncknf*igpxfttnfkygk*
aqcqwhfpr*ikpvmpifilmkf*kf*rexygxnnggggggggggggggpppppprggdn
nnnnnnnkitq*lk*k*nkkkikikhh*kn*v*iknk*kineiikk

Frame B:
fifyffkkknicsv*fl*iifytlvnnlk*ivmiihqlflffvvklhfgkqwh*nfivei
eflenqwieliii*k*iilmvnqc*in*dhlvmmnlqikini*hiqfylcfkfhylnyik
akv*ihllfmvlvvekwqvyialvh*h*nqhvi**wteqsywmlc*ksvqkdfhflvqld
vmislktiqrniqmlklvvviqtllhyl---

---ksplpfhtsvivvlrvl*kyxvlnlmdfhsafrlihrqmvksimrlqpfnifrsird
clctkvaiedilgtldsngxeqshic*lsphpigspymfeivktfksgrfsrrtsnmenr
psvngtflvk*nq*cqysf**nfrnfkgrxmgximvvvvvvvvvvvvvvlllpppvvvii
iiiiiiirlhnn*nknkikkk*klnttkkikyk*kinkk*mk**kk

Frame C:
lffiflkkktfvvfnfyk*ffipl*ii*ne*l**fincfyflwssytlenngirtl*wks
nf*ring*n**lfknklf*w*invk*ikitw***isk*rsifntfsfiyvssfii*ii*k
rrcksifylwc*lwrngkfillwcinikism*fnngqskvigccvekvskrififwfnwm
**fh*klfkeisrc*nwwssyrlfyiiw---

---NHHSHFTHLLLLCYECFENTGY*i*wifiqhsdlyivkw*nl**gyshstyfevsei
vfvlklllkiy*ehwtqmvxskvifvdyrrtqlvpliclkl*kllnraxfhdelqiwkig
pvsmalsslnktsnanihfneileilkgxlwv**wwwwwwwwwwwwwwsssspppww***
*******dytiikikik*kknkn*tplkklsinkk*iknk*nnkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL761 (SSL761Q) /CSM/SS/SSL7-C/SSL761Q.Seq.d/                       1943   0.0
AFJ179 (AFJ179Q) /CSM/AF/AFJ1-D/AFJ179Q.Seq.d/                        896   0.0
AFJ713 (AFJ713Q) /CSM/AF/AFJ7-A/AFJ713Q.Seq.d/                        500   e-140
SSG173 (SSG173Q) /CSM/SS/SSG1-D/SSG173Q.Seq.d/                         48   3e-04
CFE362 (CFE362Q) /CSM/CF/CFE3-C/CFE362Q.Seq.d/                         48   3e-04
AFB633 (AFB633Q) /CSM/AF/AFB6-B/AFB633Q.Seq.d/                         48   3e-04
VSB313 (VSB313Q) /CSM/VS/VSB3-A/VSB313Q.Seq.d/                         44   0.005
SLB603 (SLB603Q) /CSM/SL/SLB6-A/SLB603Q.Seq.d/                         44   0.005
AHD560 (AHD560Q) /CSM/AH/AHD5-C/AHD560Q.Seq.d/                         44   0.005
VSD760 (VSD760Q) /CSM/VS/VSD7-C/VSD760Q.Seq.d/                         40   0.084
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115679|AC115679.2 Dictyostelium discoideum chromosome 2 map 6500635-6528406 strain AX4, complete sequence.    54  3e-10  3
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    38  1e-06  7
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34  1e-05  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    46  3e-04  7
AX344559|AX344559.1 Sequence 10 from Patent WO0200932.            36  5e-04  11
AX346605|AX346605.1 Sequence 1676 from Patent WO0200928.          32  6e-04  9
AX356494|AX356494.1 Sequence 128 from Patent WO0181622.           38  7e-04  8
AX347027|AX347027.1 Sequence 2098 from Patent WO0200928.          38  7e-04  8
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    38  7e-04  10
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38  0.001  7
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KU5) RecName: Full=Probable polyketide synthase 24;         ...   120   1e-25
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   119   2e-25
(Q54KU3) RecName: Full=Probable polyketide synthase 25;         ...   119   2e-25
(Q55DM7) RecName: Full=Probable polyketide synthase 2;          ...   115   3e-24
(Q54QD1) RecName: Full=Probable polyketide synthase 23;         ...   113   2e-23
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   110   1e-22
(Q54ED6) RecName: Full=Probable polyketide synthase 41;         ...   109   2e-22
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...   109   2e-22
(Q54TW0) RecName: Full=Probable polyketide synthase 18;         ...   108   4e-22
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   103   1e-20
protein update 2009. 6.15
PSORT 

 psg: 0.96  gvh: 0.45  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for SSL761 is cyt
5' end seq. ID SSL761F
5' end seq. 
>SSL761F.Seq
ATTTATTTTTTATTTTTTTAAAAAAAAAAACATTTGTAGTGTTTAATTTTTATAAATAAT
TTTTTATACCCTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTT
ATTTTTTGTGGTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAAT
CGAATTTTTAGAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGAT
GGTGAATCAATGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGAT
CAATATTTAACACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAA
AGCGAAGGTGTAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTA
TATTGCTCTGGTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAG
TTATTGGATGTTGTGTTGAAAAAGTGTCCAAAAGGATTTTCATTTTTTGGTTCAATTGGA
TGTGATGATTTCATTAAAAACTATTCAAAGAAATATCCAGATGTTGAAATTGGTGGTCGT
CATACAGACTCTTTTACATTATTTGG----------
Length of 5' end seq. 626
3' end seq. ID SSL761Z
3' end seq. 
>SSL761Z.Seq
----------TAAATCACCACTCCCATTTCACACATCTGTTATTGTTGTGCTACGAGTGC
TTTGAAAATACNGGGTATTGAATTTAATGGATTTTCATTCAGCATTCCGACTTATACATC
GTCAAATGGTAAAATCTATAATGAGGCTACAGCCATTCAACATATTTCGAAGTATCAGAG
ATTGTCTTTGTACTAAAGTTGCTATTGAAGATATATTAGGAACACTGGACTCAAATGGTA
ANGAGCAAAGTCATATTTGTTGATTATCGCCGCACCCAATTGGTTCCCCTTATATGTTTG
AAATTGTAAAAACTTTTAAATCGGGCCGNTTTTCACGACGAACTTCAAATATGGAAAATA
GGCCCAGTGTCAATGGCACTTTCCTCGTTAAATAAAACCAGTAATGCCAATATTCATTTT
AATGAAATTTTAGAAATTTTAAAGGGAGANTTATGGGTNTAATAATGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTCCTCCTCCTCCCCCCCCCCGTGGTGGTGATAA
TAATAATAATAATAATAATAATAAGATTACACAATAATTAAAATAAAAATAAAATAAAAA
AAAAATAAAAATTAAACACCACTAAAAAAATTAAGTATAAATAAAAAATAAATAAAAAAT
AAATGAAATAATAAAAAAAA
Length of 3' end seq. 670
Connected seq. ID SSL761P
Connected seq. 
>SSL761P.Seq
ATTTATTTTTTATTTTTTTAAAAAAAAAAACATTTGTAGTGTTTAATTTTTATAAATAAT
TTTTTATACCCTTGTAAATAATTTAAAATGAATAGTTATGATAATTCATCAATTGTTTTT
ATTTTTTGTGGTCAAGCTACACTTTGGAAAACAATGGCATTAGAACTTTATAGTGGAAAT
CGAATTTTTAGAGAATCAATGGATAGAATTGATAATTATTTAAAAATAAATTATTTTGAT
GGTGAATCAATGTTAAATAAATTAAGATCACTTGGTGATGATGAATCTCCAAATAAAGAT
CAATATTTAACACATTCAGTTTTATTTATGTTTCAAGTTTCATTATTTGAATTATATAAA
AGCGAAGGTGTAAATCCATCTTTTATTTATGGTGTTAGTTGTGGAGAAATGGCAAGTTTA
TATTGCTCTGGTGCATTAACATTAAAATCAGCATGTGATTTAATAATGGACAGAGCAAAG
TTATTGGATGTTGTGTTGAAAAAGTGTCCAAAAGGATTTTCATTTTTTGGTTCAATTGGA
TGTGATGATTTCATTAAAAACTATTCAAAGAAATATCCAGATGTTGAAATTGGTGGTCGT
CATACAGACTCTTTTACATTATTTGG----------TAAATCACCACTCCCATTTCACAC
ATCTGTTATTGTTGTGCTACGAGTGCTTTGAAAATACNGGGTATTGAATTTAATGGATTT
TCATTCAGCATTCCGACTTATACATCGTCAAATGGTAAAATCTATAATGAGGCTACAGCC
ATTCAACATATTTCGAAGTATCAGAGATTGTCTTTGTACTAAAGTTGCTATTGAAGATAT
ATTAGGAACACTGGACTCAAATGGTAANGAGCAAAGTCATATTTGTTGATTATCGCCGCA
CCCAATTGGTTCCCCTTATATGTTTGAAATTGTAAAAACTTTTAAATCGGGCCGNTTTTC
ACGACGAACTTCAAATATGGAAAATAGGCCCAGTGTCAATGGCACTTTCCTCGTTAAATA
AAACCAGTAATGCCAATATTCATTTTAATGAAATTTTAGAAATTTTAAAGGGAGANTTAT
GGGTNTAATAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTCCTCCT
CCTCCCCCCCCCCGTGGTGGTGATAATAATAATAATAATAATAATAATAAGATTACACAA
TAATTAAAATAAAAATAAAATAAAAAAAAAATAAAAATTAAACACCACTAAAAAAATTAA
GTATAAATAAAAAATAAATAAAAAATAAATGAAATAATAAAAAAAA
Length of connected seq. 1296
Full length Seq ID -
Full length Seq. -
Length of full length seq. -