>SSL754 (SSL754Q) /CSM/SS/SSL7-C/SSL754Q.Seq.d/
CCAGCTCACCCTACACGAAGGGGTCAATTGNGTGGGGGCACCGGGCCCCCCCCCGTAGGT
CGGCTCTGTTTTGGGCATTCGCGCGGTTATGCCGCCCGGTTCTATCAATACTCTCGAGTA
TGTAACACTCATCATCTACCACCACATCCGCCACAATTACCGCTACCACANCCAAGTTTT
ATATTACTGTAACAACTTTTATAGATAATATCAATGAAAAGTTTGAAAAGTTTTTATTGA
ATTGTAACAAGCAAAAATAATAACCATTAAA

PAHPTRRGQLXGGTGPPPVGRLCFGHSRGYAARFYQYSRVCNTHHLPPHPPQLPLPXPSF
ILL*qll*iismkslksfy*ivtsknnnh*

Frame A:
PAHPTRRGQLXGGTGPPPVGRLCFGHSRGYAARFYQYSRVCNTHHLPPHPPQLPLPXPSF
ILL*qll*iismkslksfy*ivtsknnnh*


Frame B:
qltlhegvnxvgapgppp*vgsvlgiravmppgsintleyvtliiyhhirhnyryhxqvl
yycnnfyr*yq*kv*kvfiel*qakiitik


Frame C:
sspytkgsixwghrapprrsalfwafarlcrpvlsilssm*hssstttsatitattxkfy
itvttfidninekfekfllncnkqk**pl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL754 (SSL754Q) /CSM/SS/SSL7-C/SSL754Q.Seq.d/                        472   e-132
SSL755 (SSL755Q) /CSM/SS/SSL7-C/SSL755Q.Seq.d/                        216   1e-55
VHP447 (VHP447Q) /CSM/VH/VHP4-B/VHP447Q.Seq.d/                         44   0.001
VHO316 (VHO316Q) /CSM/VH/VHO3-A/VHO316Q.Seq.d/                         44   0.001
VFN624 (VFN624Q) /CSM/VF/VFN6-A/VFN624Q.Seq.d/                         44   0.001
CFA568 (CFA568Q) /CSM/CF/CFA5-C/CFA568Q.Seq.d/                         44   0.001
SSC182 (SSC182Q) /CSM/SS/SSC1-D/SSC182Q.Seq.d/                         42   0.004
SSE590 (SSE590Q) /CSM/SS/SSE5-D/SSE590Q.Seq.d/                         38   0.065
SHC713 (SHC713Q) /CSM/SH/SHC7-A/SHC713Q.Seq.d/                         38   0.065
SFD293 (SFD293Q) /CSM/SF/SFD2-D/SFD293Q.Seq.d/                         36   0.26

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC131151|AC131151.2 Homo sapiens 3 BAC RP11-219E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40  0.058  4
BU724727| serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10; protease inhibitor 10 (ovalbumin type, bomapin) [Homo sapiens], mRNA sequence.    46  0.22  1
AF040989|AF040989.1 Drosophila melanogaster roundabout 1 (robo1) mRNA, complete cds.    32  1.9  3
AC136907|AC136907.2 Rattus norvegicus clone CH230-243M10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36  2.3  4
AF000198|AF000198.2 Caenorhabditis elegans cosmid T28F2, complete sequence.    34  2.8  3
Z98974|Z98974.2 S.pombe chromosome I cosmid c19A8.                42  3.0  3
AC125131|AC125131.3 Mus musculus chromosome UNK clone RP24-310B22, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36  3.0  2
AC084210|AC084210.3 Homo sapiens chromosome 7 clone RP11-556H1, WORKING DRAFT SEQUENCE, 36 unordered pieces.    42  3.4  1
BE971504|BE971504.1 601651210R1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE:3934419 3', mRNA sequence.    42  3.4  1
BZ611403|BZ611403.1 WHAAP15TR Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-4D6, DNA sequence.    42  3.4  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 383,943,028

 psg: 0.82  gvh: 0.41  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.58  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear

>> prediction for SSL754 is mit

>SSL754E.Seq
CCAGCTCACCCTACACGAAGGGGTCAATTGNGTGGGGGCACCGGGCCCCCCCCCGTAGGT
CGGCTCTGTTTTGGGCATTCGCGCGGTTATGCCGCCCGGTTCTATCAATACTCTCGAGTA
TGTAACACTCATCATCTACCACCACATCCGCCACAATTACCGCTACCACANCCAAGTTTT
ATATTACTGTAACAACTTTTATAGATAATATCAATGAAAAGTTTGAAAAGTTTTTATTGA
ATTGTAACAAGCAAAAATAATAACCATTAAA