>SSL638 (SSL638Q) /CSM/SS/SSL6-B/SSL638Q.Seq.d/
XXXXXXXXXXAANTAAGANTTAAGACCAGGATAAAACCCATGAAAAGAATAGGGAAAAAT
CCAGAAGGCCCATACACACAATAAGATTAGAGAATTAGGGAGCAGATGTGAAACATGAAG
CCACCAATCCCAAATGATTATTGGGAACATTAGAGATTAATTGAAAATATGGGATAAAGA
CCATTAGCCGCCACCTTCAAAGAGCTCATTAGTGCATTGGATCATGTTATCATTGATGCC
GATATCTCTGATTTGAATGGTAGAGACTTTGGAAGAATCTTTCCTCACCGGGCAAGAGGT
CCCATGGGAGGCATTCATTGATGCACTTTGCAATTGGTCAAAGGCACCAGCTCGTAATCA
AATGTGATAAAACTTCAATCGACTATTTAAATATCAAATGTTTGAAAGCAGTTTTGGCAG
AATCTCCAAAATCTGAAGGTACTGGTGTTGAAACCGTTGTAAACATTGAAAAGTTTGGTA
AGATTTTAGAGTTTTTCGGTCCAGTACCTGAACCAGCTCCAGGTCATTCAATTATGGACA
CTGTTAGAGAGATTCTCTCTCAAAAATGGTTCCATGGTGATTTAGACACCACTGAAGCAG
CTTCACGTTTAAATGGTCAACCAATTGGCTCATTTTTAATTCGTTTCAGTTCAACCAATG
CCGGTTGTTTCACCATTTCTCAAGTGGTCGATGGTGGCTCAATTAAACATCAAAGAGTCT
CAAGACAAGGCGTTAAATTTAACTACCAAAATGTAATTTACAACAGTCTCATTGAAATCG
TCAGTAAAAATGGTGGTGGTGCTAATGGTGACGTTAAATTAGATTCTCAATTAGGTGTTC
CAAATTATAAATTTATGTCTTTATTCTGTGTATTAAATAAAGAATCAGAAGTTTACCAAT
AAATATATTTATAAAAAAAAAAATAAAAAAAAAAAAAATA

---xkx*dqdktheknreksrrpihtirlen*gadvkheatnpk*llgtlein*kygikt
isrhlqrah*cigscyh*cryl*few*RLWKNLSSPGKRSHGRHSLMHFAIGQRHQLVIK
CDKTSIDYLNIKCLKAVLAESPKSEGTGVETVVNIEKFGKILEFFGPVPEPAPGHSIMDT
VREILSQKWFHGDLDTTEAASRLNGQPIGSFLIRFSSTNAGCFTISQVVDGGSIKHQRVS
RQGVKFNYQNVIYNSLIEIVSKNGGGANGDVKLDSQLGVPNYKFMSLFCVLNKESEVYQ*
iyl*kkk*kkkk

Frame A:
---xkx*dqdktheknreksrrpihtirlen*gadvkheatnpk*llgtlein*kygikt
isrhlqrah*cigscyh*cryl*few*RLWKNLSSPGKRSHGRHSLMHFAIGQRHQLVIK
CDKTSIDYLNIKCLKAVLAESPKSEGTGVETVVNIEKFGKILEFFGPVPEPAPGHSIMDT
VREILSQKWFHGDLDTTEAASRLNGQPIGSFLIRFSSTNAGCFTISQVVDGGSIKHQRVS
RQGVKFNYQNVIYNSLIEIVSKNGGGANGDVKLDSQLGVPNYKFMSLFCVLNKESEVYQ*
iyl*kkk*kkkk


Frame B:
---xrxktrikpmkrigknpegpytq*d*rireqm*nmkppipndyweh*rlienmg*rp
laatfkelisaldhviidadisdlngrdfgrifphrargpmggih*ctlqlvkgtss*sn
viklqsti*isnv*kqfwqnlqnlkvlvlkpl*tlkslvrf*sfsvqylnqlqviqlwtl
lerfslkngsmvi*tplkqlhv*mvnqlahf*fvsvqpmpvvspflkwsmvaqlnikesq
dkalnlttkm*fttvslkssvkmvvvlmvtln*iln*vfqiinlclysvy*iknqkftnk
yiykkknkkkkn


Frame C:
---*xlrpg*np*ke*gkiqkahthnkirelgsrcet*shqsqmiignird*lkiwdkdh
*pppsksslvhwimlslmpisli*mvetleesfltgqevpweafidalcnwskaparnqm
**nfnrlfkyqmfessfgriski*rywc*nrckh*kvw*dfrvfrsst*tssrsfnyghc
*rdslskmvpw*frhh*ssftfkwstnwlifnsfqfnqcrlfhhfssgrwwln*tskslk
trr*i*lpkcnlqqsh*nrq*kwwwc*w*r*irfsircskl*iyvfilcik*rirslpin
ifikkkikkkki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL638 (SSL638Q) /CSM/SS/SSL6-B/SSL638Q.Seq.d/                       1776   0.0
CFC750 (CFC750Q) /CSM/CF/CFC7-C/CFC750Q.Seq.d/                       1318   0.0
VFF386 (VFF386Q) /CSM/VF/VFF3-D/VFF386Q.Seq.d/                       1316   0.0
SFE710 (SFE710Q) /CSM/SF/SFE7-A/SFE710Q.Seq.d/                       1316   0.0
CFK162 (CFK162Q) /CSM/CF/CFK1-C/CFK162Q.Seq.d/                       1263   0.0
VFO205 (VFO205Q) /CSM/VF/VFO2-A/VFO205Q.Seq.d/                       1239   0.0
AFD569 (AFD569Q) /CSM/AF/AFD5-C/AFD569Q.Seq.d/                       1233   0.0
CFB626 (CFB626Q) /CSM/CF/CFB6-B/CFB626Q.Seq.d/                       1231   0.0
AFI789 (AFI789Q) /CSM/AF/AFI7-D/AFI789Q.Seq.d/                       1231   0.0
SFC780 (SFC780Q) /CSM/SF/SFC7-D/SFC780Q.Seq.d/                       1229   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC144723|AC144723.1 Medicago truncatula clone mth2-7h1, WORKING DRAFT SEQUENCE, 18 unordered pieces.    46  0.79  1
AX145470|AX145470.1 Sequence 4192 from Patent WO0134809.          36  1.3  2
AF270152|AF270152.1 Staphylococcus epidermidis strain SR1 clone step.1051c12 genomic sequence.    36  1.3  2
AC119034|AC119034.2 Homo sapiens 3 BAC RP11-303O22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.4  5
BU582405|BU582405.1 PL N82 P.lunula ZAP-cDNA library Pyrocystis lunula cDNA clone 731 5' similar to SHK1 protein kinase, mRNA sequence.    38  2.1  2
AC118147|AC118147.5 Rattus norvegicus clone CH230-372O4, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  3.1  1
AC129543|AC129543.3 Mus musculus clone RP23-254K13, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  3.1  1
AQ082291|AQ082291.1 RPCI11-55J14.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-55J14, genomic survey sequence.    44  3.1  1
AC134513|AC134513.2 Rattus norvegicus clone CH230-13G24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  3.1  1
AC024427|AC024427.3 Homo sapiens chromosome 3 clone RP11-424C9 map 3, WORKING DRAFT SEQUENCE, 30 unordered pieces.    44  3.1  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y55) RecName: Full=Dual specificity protein kinase shkC;    ...   363   e-111
(Q54RB7) RecName: Full=Dual specificity protein kinase shkA;    ...   115   2e-24
(P17713) RecName: Full=Tyrosine-protein kinase STK;          EC=...    54   1e-05
(Q54IP4) RecName: Full=Dual specificity protein kinase shkB;    ...    50   5e-05
BC081193_1(BC081193|pid:none) Xenopus laevis MGC84470 protein, m...    50   1e-04
BC085501_1(BC085501|pid:none) Mus musculus phosphatidylinositol ...    49   2e-04
AE013599_599(AE013599|pid:none) Drosophila melanogaster chromoso...    49   2e-04
BC089805_1(BC089805|pid:none) Rattus norvegicus phosphoinositide...    49   2e-04
AK146195_1(AK146195|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...    49   2e-04
AJ012336_1(AJ012336|pid:none) Paracentrotus lividus mRNA for pho...    49   2e-04

 psg: 0.49  gvh: 0.43  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SSL638 is mit

>SSL638Z.Seq
----------AANTAAGANTTAAGACCAGGATAAAACCCATGAAAAGAATAGGGAAAAAT
CCAGAAGGCCCATACACACAATAAGATTAGAGAATTAGGGAGCAGATGTGAAACATGAAG
CCACCAATCCCAAATGATTATTGGGAACATTAGAGATTAATTGAAAATATGGGATAAAGA
CCATTAGCCGCCACCTTCAAAGAGCTCATTAGTGCATTGGATCATGTTATCATTGATGCC
GATATCTCTGATTTGAATGGTAGAGACTTTGGAAGAATCTTTCCTCACCGGGCAAGAGGT
CCCATGGGAGGCATTCATTGATGCACTTTGCAATTGGTCAAAGGCACCAGCTCGTAATCA
AATGTGATAAAACTTCAATCGACTATTTAAATATCAAATGTTTGAAAGCAGTTTTGGCAG
AATCTCCAAAATCTGAAGGTACTGGTGTTGAAACCGTTGTAAACATTGAAAAGTTTGGTA
AGATTTTAGAGTTTTTCGGTCCAGTACCTGAACCAGCTCCAGGTCATTCAATTATGGACA
CTGTTAGAGAGATTCTCTCTCAAAAATGGTTCCATGGTGATTTAGACACCACTGAAGCAG
CTTCACGTTTAAATGGTCAACCAATTGGCTCATTTTTAATTCGTTTCAGTTCAACCAATG
CCGGTTGTTTCACCATTTCTCAAGTGGTCGATGGTGGCTCAATTAAACATCAAAGAGTCT
CAAGACAAGGCGTTAAATTTAACTACCAAAATGTAATTTACAACAGTCTCATTGAAATCG
TCAGTAAAAATGGTGGTGGTGCTAATGGTGACGTTAAATTAGATTCTCAATTAGGTGTTC
CAAATTATAAATTTATGTCTTTATTCTGTGTATTAAATAAAGAATCAGAAGTTTACCAAT
AAATATATTTATAAAAAAAAAAATAAAAAAAAAAAAAATA