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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL630
Library SS
(Link to library)
Clone ID SSL630
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13951-1
Original site URL
Representative seq. ID SSL630Z
(Link to Original site)
Representative DNA sequence 
>SSL630 (SSL630Q) /CSM/SS/SSL6-B/SSL630Q.Seq.d/
XXXXXXXXXXATTGGGCGGGTTGGCAACCTGCCCTCAACCGGTTTACCCGGACCTAAGGG
CCAACGTTTGCTGGGCAACTTTTCCACCCCGGGGACTCCCCAATTTTCCAGGGGTAGGAA
ACTCGGAAAGGAATCCCCATTTACCACCGGTCCCTCAATGGCCCGGAATCACCCTTGGGC
AATTTCCTCCTTCGAAAACATGGTTTTACCGTGGTGCCAAGTCCTCTGGCCGCCGGTGCC
ATTGGGAACTTTCGCTTCCAATCATGGCAATGCGGTTTGGTAACCCCGTGCCATTGGTCT
TCCTGGGGCAGTTATTTCGCCTCAAGGAAACCAGTGCCAGAGGATCCAGTTGGAACCAAC
CAAACCCCACGTCAAGTCCCAGACCAAATTTGGTATACGACCCTTATCTCTCCATTTTAA
TGGGTGGTATTTTACCATTTGGTGCTGTCTTTATCGAACTCCATTTCATTCTCACCTCAC
TTTGGGATAATCAACTCTACTATATCTCGGGTCCCCTTCTCATCGTTTTAATGATCTTAA
TTGTAACCTCCCGCTGAAATCTCAATCGTTATGTGTTATTTCCAATTATGCGCTGAAGAT
CATCATTGGTGGTGGAGATCCTTCTTAACCGCTGGTAGCTCTTCTCTTTACATGTTTATC
TACTCTGTTAGTTTCTTCCGTTATTTAGGTATCACAAAATTCATCTCATCTTTATTGTAT
TTCTCTTATTCTTTCATTATGTCTTTAGCTTTTGCTGCTTTAACTGGTACAATTGGTTTT
TATTCTTGTTACTTTTTAGTTAGAAAAATTTATAGTTCAATTCATATTAATTAAAAAAAA
AA
sequence update 1998. 1.20
Translated Amino Acid sequence 
---LGGLATCPQPVYPDLRANVCWATFPPRGLPNFPGVGNSERNPHLPPVPQWPGITLGQ
FPPSKTWFYRGAKSSGRRCHWELSLPIMAMRFGNPVPLVFLGQLFRLKETSARGSSWNQP
NPTSSPRPNLVYDPYLSILMGGILPFGAVFIELHFILTSLWDNQLYYISGPLLIVLMILI
VTSR*nlnryvlfpimr*rsslvveillnrw*lfslhvyllc*flplfryhkihlifivf
llffhyvfsfccfnwynwflflllfs*knl*fnsy*lkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---LGGLATCPQPVYPDLRANVCWATFPPRGLPNFPGVGNSERNPHLPPVPQWPGITLGQ
FPPSKTWFYRGAKSSGRRCHWELSLPIMAMRFGNPVPLVFLGQLFRLKETSARGSSWNQP
NPTSSPRPNLVYDPYLSILMGGILPFGAVFIELHFILTSLWDNQLYYISGPLLIVLMILI
VTSR*nlnryvlfpimr*rsslvveillnrw*lfslhvyllc*flplfryhkihlifivf
llffhyvfsfccfnwynwflflllfs*knl*fnsy*lkkk


Frame B:
---wagwqpalnrftrt*gptfagqlfhpgdspifqg*etrkgipiyhrslngpesplgn
fllrkhgftvvpsplaagaignfrfqswqcglvtpchwsswgsyfasrkpvpedpvgtnq
tprqvpdqiwyttlispf*wvvfyhlvlslsnsisfsphfgiinstisrvpfssf**s*l
*ppaeisivmcyfqlcaedhhwwwrsfltagssslymfiysvsffrylgitkfissllyf
sysfimslafaaltgtigfyscyflvrkiyssihin*kk


Frame C:
---grvgnlpstglpgpkgqrllgnfstpgtpqfsrgrklgkespfttgpsmarnhpwai
ssfenmvlpwcqvlwppvplgtfasnhgnavw*praiglpgavispqgnqcqriqleptk
phvksqtkfgirplslhfngwyftiwcclyrtpfhshltlg*stllylgspshrfndlnc
nlplksqslcvisnyalkiiigggdps*plvallftclstllvssvi*vsqnsshlycis
lilslcl*llll*lvqlvfilvtf*lekfivqfilikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL630 (SSL630Q) /CSM/SS/SSL6-B/SSL630Q.Seq.d/                       1629   0.0
SSI242 (SSI242Q) /CSM/SS/SSI2-B/SSI242Q.Seq.d/                        979   0.0
SLG563 (SLG563Q) /CSM/SL/SLG5-C/SLG563Q.Seq.d/                        942   0.0
SLD356 (SLD356Q) /CSM/SL/SLD3-C/SLD356Q.Seq.d/                        896   0.0
AHN564 (AHN564Q) /CSM/AH/AHN5-C/AHN564Q.Seq.d/                        890   0.0
VFB280 (VFB280Q) /CSM/VF/VFB2-D/VFB280Q.Seq.d/                        846   0.0
AHP269 (AHP269Q) /CSM/AH/AHP2-C/AHP269Q.Seq.d/                        829   0.0
VHP885 (VHP885Q) /CSM/VH/VHP8-D/VHP885Q.Seq.d/                        777   0.0
VHB671 (VHB671Q) /CSM/VH/VHB6-C/VHB671Q.Seq.d/                        777   0.0
SFI566 (SFI566Q) /CSM/SF/SFI5-C/SFI566Q.Seq.d/                        777   0.0
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ318760|AJ318760.1 Dictyostelium discoideum mRNA for PHG1A protein.   559  0.0  5
BU799522|BU799522.1 SJF2BWE06 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.013  2
BU775024|BU775024.1 SJEAXE04 SJE Schistosoma japonicum cDNA, mRNA sequence.    46  0.014  2
BU725874|BU725874.1 SJMCKH04 SJM Schistosoma japonicum cDNA, mRNA sequence.    46  0.016  2
BU723480|BU723480.1 SJMAWG09 SJM Schistosoma japonicum cDNA, mRNA sequence.    46  0.016  2
BU802754|BU802754.1 SJFAND06 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.017  2
BU803946|BU803946.1 SJFBFA03 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.017  2
BU804471|BU804471.1 SJFBLE07 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.017  2
BU804339|BU804339.1 SJFBKB07 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.017  2
BU803955|BU803955.1 SJFBFA12 SJF Schistosoma japonicum cDNA, mRNA sequence.    46  0.017  2
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FP0) RecName: Full=Putative phagocytic receptor 1a; Flags: P...   206   1e-51
AM472385_3(AM472385|pid:none) Vitis vinifera contig VV78X080386....   137   3e-31
AP001307_19(AP001307|pid:none) Arabidopsis thaliana genomic DNA,...   135   2e-30
AP005458_25(AP005458|pid:none) Oryza sativa Japonica Group genom...   134   4e-30
BT033572_1(BT033572|pid:none) Zea mays full-length cDNA clone ZM...   130   5e-29
BC006741_1(BC006741|pid:none) Mus musculus transmembrane 9 super...    92   7e-29
EF146702_1(EF146702|pid:none) Populus trichocarpa clone WS01212_...   129   9e-29
AY091067_1(AY091067|pid:none) Arabidopsis thaliana putative mult...   127   3e-28
AC005967_8(AC005967|pid:none) Arabidopsis thaliana chromosome 2 ...   127   3e-28
AC073944_7(AC073944|pid:none) Arabidopsis thaliana chromosome 1 ...   127   5e-28
protein update 2009. 6.15
PSORT 

 psg: 0.88  gvh: 0.53  alm: 0.22  top: 0.43  tms: 0.13  mit: 0.15  mip: 0.20
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SSL630 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL630Z
3' end seq. 
>SSL630Z.Seq
----------ATTGGGCGGGTTGGCAACCTGCCCTCAACCGGTTTACCCGGACCTAAGGG
CCAACGTTTGCTGGGCAACTTTTCCACCCCGGGGACTCCCCAATTTTCCAGGGGTAGGAA
ACTCGGAAAGGAATCCCCATTTACCACCGGTCCCTCAATGGCCCGGAATCACCCTTGGGC
AATTTCCTCCTTCGAAAACATGGTTTTACCGTGGTGCCAAGTCCTCTGGCCGCCGGTGCC
ATTGGGAACTTTCGCTTCCAATCATGGCAATGCGGTTTGGTAACCCCGTGCCATTGGTCT
TCCTGGGGCAGTTATTTCGCCTCAAGGAAACCAGTGCCAGAGGATCCAGTTGGAACCAAC
CAAACCCCACGTCAAGTCCCAGACCAAATTTGGTATACGACCCTTATCTCTCCATTTTAA
TGGGTGGTATTTTACCATTTGGTGCTGTCTTTATCGAACTCCATTTCATTCTCACCTCAC
TTTGGGATAATCAACTCTACTATATCTCGGGTCCCCTTCTCATCGTTTTAATGATCTTAA
TTGTAACCTCCCGCTGAAATCTCAATCGTTATGTGTTATTTCCAATTATGCGCTGAAGAT
CATCATTGGTGGTGGAGATCCTTCTTAACCGCTGGTAGCTCTTCTCTTTACATGTTTATC
TACTCTGTTAGTTTCTTCCGTTATTTAGGTATCACAAAATTCATCTCATCTTTATTGTAT
TTCTCTTATTCTTTCATTATGTCTTTAGCTTTTGCTGCTTTAACTGGTACAATTGGTTTT
TATTCTTGTTACTTTTTAGTTAGAAAAATTTATAGTTCAATTCATATTAATTAAAAAAAA
AA
Length of 3' end seq. 832
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -