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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL615
Library SS
(Link to library)
Clone ID SSL615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15330-1
Original site URL
Representative seq. ID SSL615Z
(Link to Original site)
Representative DNA sequence 
>SSL615 (SSL615Q) /CSM/SS/SSL6-A/SSL615Q.Seq.d/
XXXXXXXXXXAAACCCAAAACACTGGCTCNACCCCCCAACNGNCCGGACCAACTACAGGC
CACCNTTGGGCCAATGGTTTAGCGGGAAGGCCCCCCGCGCCCATTAGGAGACCTTCACGG
TTTACTTTGGCAAACCAACAAAAGCTCTCTTACCCCAAATACGGTACAGCACCAGCCATA
ACGTAACCTTGGCTAAATCTTTTTTGGTTCCCATGACAAACCAAATTTATCAGGCTTTCC
CATGTTCAATTTTAGAGATGTTAAGAACAGCCCAAACCTATGATGTAATTGGTATTGATG
AAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAGGGTCAAA
ACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATT
GATTTAGTATCAAAGGCTGAATATATTCCAAAGTTAACTGCCGTTTGTATGGTTTGCTAC
AATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGT
ATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAAT
AGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCT
CCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGA
TCCTAATTATATTTGTACATTATAAATTATAATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
sequence update 1998. 1.19
Translated Amino Acid sequence 
---tqntgstpqxxgpttghxwanglagrppapirrpsrftlanqqklsypkygtapait
*pwlnlfwfp*qtkfirlshvqf*rc*eqpkpmm*LVLMKANFSQTLYNLVKTWQIRVKT
VIIAALDGTFQRKPFQSVIDLVSKAEYIPKLTAVCMVCYNEAAFSKRIVESDDIELIGGI
DKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs
*lylyiinynqkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---npkhwlxpptxrtnyrpplgqwfsgkaprah*etftvyfgkptkallpqirystshn
vtlaksflvpmtnqiyqafpcsilemlrtaqtydvigidegqffpdvvqfsedlanqgqn
ryncrtrwylpkktipish*fsikg*iyskvncrlygllq*srlfktyrrk**yrinwwy
r*iyfrlpwllq**sk*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk**llimki
liifvhykl*skkkkkkkkk


Frame B:
---tqntgstpqxxgpttghxwanglagrppapirrpsrftlanqqklsypkygtapait
*pwlnlfwfp*qtkfirlshvqf*rc*eqpkpmm*LVLMKANFSQTLYNLVKTWQIRVKT
VIIAALDGTFQRKPFQSVIDLVSKAEYIPKLTAVCMVCYNEAAFSKRIVESDDIELIGGI
DKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNNDY*l*rs
*lylyiinynqkkkkkkkkk


Frame C:
---pktlaxppnxpdqlqatxgpmv*regpprplgdlhgllwqtnkssltpntvqhqp*r
nlg*iffgshdkpnlsgfpmfnfrdvknspnl*cnwy**rpifprrcti**rlgksgskp
l*lph*mvpskenhsnqsli*yqrlnifqs*lpfvwfatmkppfqnvsskvmisn*lvv*
inifpfavvativikmkeivpnqakphvililkahhpllhll*tlilmii*imiinyedp
nyictl*iiikkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL615 (SSL615Q) /CSM/SS/SSL6-A/SSL615Q.Seq.d/                       1451   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                        961   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                        961   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                        961   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                        961   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                        955   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                        954   0.0
SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/                        954   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                        954   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                        954   0.0
own update 2000. 8.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   779  0.0  4
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   724  0.0  4
CB888459|CB888459.1 taa92g08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:KITH_CHICK P04047 THYMIDINE KINASE, CYTOSOLIC ;, mRNA sequence.    56  7e-04  1
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48  0.005  2
CB823537|CB823537.1 EST 4761 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh006p21 3', mRNA sequence.    50  0.042  1
CB823884|CB823884.1 EST 5108 Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone bh002g05 3', mRNA sequence.    50  0.042  1
AC112946|AC112946.2 Mus musculus clone RP23-381A21, WORKING DRAFT SEQUENCE, 12 ordered pieces.    38  0.34  4
AC004037|AC004037.1 Homo sapiens chromosome 5, BAC clone 64o24, BAC 5001 (LBNL H101), complete sequence.    44  1.7  2
AC100770|AC100770.2 Homo sapiens chromosome 11, clone RP11-46P12, complete sequence.    42  1.7  5
AC126735|AC126735.7 Rattus norvegicus clone CH230-7B3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  1.8  4
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   100   1e-28
BT030694_1(BT030694|pid:none) Bos taurus thymidine kinase 1, sol...    96   6e-28
DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   100   6e-28
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   100   6e-28
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...    99   1e-27
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...    99   2e-27
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   100   3e-27
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   100   3e-27
K02031_1(K02031|pid:none) Variola major virus thymidine kinase g...    97   3e-27
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ...    99   3e-27
protein update 2009. 6.15
PSORT 

 psg: 0.77  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for SSL615 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL615Z
3' end seq. 
>SSL615Z.Seq
----------AAACCCAAAACACTGGCTCNACCCCCCAACNGNCCGGACCAACTACAGGC
CACCNTTGGGCCAATGGTTTAGCGGGAAGGCCCCCCGCGCCCATTAGGAGACCTTCACGG
TTTACTTTGGCAAACCAACAAAAGCTCTCTTACCCCAAATACGGTACAGCACCAGCCATA
ACGTAACCTTGGCTAAATCTTTTTTGGTTCCCATGACAAACCAAATTTATCAGGCTTTCC
CATGTTCAATTTTAGAGATGTTAAGAACAGCCCAAACCTATGATGTAATTGGTATTGATG
AAGGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGACTTGGCAAATCAGGGTCAAA
ACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAACCATTCCAATCAGTCATT
GATTTAGTATCAAAGGCTGAATATATTCCAAAGTTAACTGCCGTTTGTATGGTTTGCTAC
AATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGATATCGAATTAATTGGTGGT
ATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGATCAAAATGAAGGAAAT
AGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAGCGCACCATCCGTTGCT
CCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGATTATTAATTATGAAGA
TCCTAATTATATTTGTACATTATAAATTATAATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
Length of 3' end seq. 774
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -