>SSL610 (SSL610Q) /CSM/SS/SSL6-A/SSL610Q.Seq.d/
GACTCATACTGTATGACCCTACGAAAACGAAAATGTTTCGCAATGCTGGTTGTGATGGTG
GTCTCCCAACCCAAATGCCTACAACCTACATCATCAAAAACGGAGGTATCCAAACCGAAG
CTACCCTATCCATACACTGCTGTTGATGGAGAATGTAAATTTAACTCTGCCCAAGTTGGT
GCTAAAATTTCATCTTTCACTATGGTTCCACAAAATGAACTCAAATTGCTTCCTACTTAT
TCAACAATGGTCCATTAGCTATTGCAGCTGATGCTGAAGAATGGCAATTCTATATGGGAG
GTGTTTTCGATTTCCCATGTGGTCAAACTTTAGATCACGGTATCTTAATTGTTGGTTATG
GTGCTCAAGATACCATCGTCGGTAAAAATACTCCATACTGGATCATTAAAAACTCATGGG
GTGCCGATTGGGGTGAAGCTGGTTACTTAAAAGTTGAAAGAAATACTGATAAATGTGGTG
TTGCCAATTTCGTTTCTTCATCAATTGTTGGTTCATCAAACTAAAAACAATAAATAAAAT
TTTATTAAATTTTTAATTTTATTTTTTTATATAAAAAAA

lilydptktkmfrnagcdgglptqmpttyiiknggiqteatlsihcc*wrm*i*lcpswc
*nfifhygstk*TQIASYLFNNGPLAIAADAEEWQFYMGGVFDFPCGQTLDHGILIVGYG
AQDTIVGKNTPYWIIKNSWGADWGEAGYLKVERNTDKCGVANFVSSSIVGSSN*kq*ikf
y*ifnfiflykk

Frame A:
dsycmtlrkrkcfamlvvmvvsqpkclqptssktevskpklpypytavdgeckfnsaqvg
akissftmvpqnelkllptystmvh*llqlmlkngnsiwevfsishvvkl*itvs*llvm
vlkipssvkilhtgslkthgvpigvklvt*klkeilinvvlpisflhqllvhqtknnk*n
fikflilffyikk


Frame B:
thtv*pyenenvsqcwl*wwspnpnaynlhhqkrrypnrsypihtlllmenvnltlpklv
lkfhlslwfhkmnsncflliqqwsisycs*c*rmailygrcfrfpmwsnfrsrylncwlw
csryhrr*kysildh*klmgcrlg*swllks*kky**mwccqfrffincwfiklktinki
llnf*fyffi*k


Frame C:
lilydptktkmfrnagcdgglptqmpttyiiknggiqteatlsihcc*wrm*i*lcpswc
*nfifhygstk*TQIASYLFNNGPLAIAADAEEWQFYMGGVFDFPCGQTLDHGILIVGYG
AQDTIVGKNTPYWIIKNSWGADWGEAGYLKVERNTDKCGVANFVSSSIVGSSN*kq*ikf
y*ifnfiflykk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL610 (SSL610Q) /CSM/SS/SSL6-A/SSL610Q.Seq.d/                       1065   0.0
VFO273 (VFO273Q) /CSM/VF/VFO2-D/VFO273Q.Seq.d/                        940   0.0
VFN261 (VFN261Q) /CSM/VF/VFN2-C/VFN261Q.Seq.d/                        940   0.0
VFM847 (VFM847Q) /CSM/VF/VFM8-B/VFM847Q.Seq.d/                        940   0.0
VFM117 (VFM117Q) /CSM/VF/VFM1-A/VFM117Q.Seq.d/                        940   0.0
VFL786 (VFL786Q) /CSM/VF/VFL7-D/VFL786Q.Seq.d/                        940   0.0
VFL771 (VFL771Q) /CSM/VF/VFL7-C/VFL771Q.Seq.d/                        940   0.0
VFL486 (VFL486Q) /CSM/VF/VFL4-D/VFL486Q.Seq.d/                        940   0.0
VFL170 (VFL170Q) /CSM/VF/VFL1-C/VFL170Q.Seq.d/                        940   0.0
VFK692 (VFK692Q) /CSM/VF/VFK6-D/VFK692Q.Seq.d/                        940   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG524692|BG524692.1 6-13 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60  3e-05  1
BG523152|BG523152.1 29-47 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60  3e-05  1
BG524924|BG524924.1 1-26 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60  3e-05  1
BG524136|BG524136.1 39-26 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60  3e-05  1
BG525215|BG525215.1 45-7 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60  3e-05  1
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    46  5e-05  3
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    46  2e-04  3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    40  0.001  2
BQ514757|BQ514757.1 EST622172 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIN86 3' end, mRNA sequence.    42  0.002  3
BQ514756|BQ514756.1 EST622171 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIN86 5' end, mRNA sequence.    42  0.002  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   153   3e-36
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot...   100   8e-24
FB844636_1(FB844636|pid:none) Sequence 63909 from Patent WO20080...    99   3e-23
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   109   5e-23
(P25804) RecName: Full=Cysteine proteinase 15A;          EC=3.4....    96   5e-23
FJ475061_1(FJ475061|pid:none) Arachis hypogaea cysteine protease...   100   6e-23
S42882(S51818;S42882) cysteine proteinase (EC 3.4.22.-) precurso...    96   6e-23
AY662991_1(AY662991|pid:none) Petunia x hybrida cysteine protein...    96   8e-23
S12099(S12099) cysteine proteinase (EC 3.4.22.-) precursor - Try...   100   1e-22
AJ297265_1(AJ297265|pid:none) Trypanosoma brucei rhodesiense par...   100   1e-22

 psg: 0.84  gvh: 0.47  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSL610 is cyt

>SSL610E.Seq
GACTCATACTGTATGACCCTACGAAAACGAAAATGTTTCGCAATGCTGGTTGTGATGGTG
GTCTCCCAACCCAAATGCCTACAACCTACATCATCAAAAACGGAGGTATCCAAACCGAAG
CTACCCTATCCATACACTGCTGTTGATGGAGAATGTAAATTTAACTCTGCCCAAGTTGGT
GCTAAAATTTCATCTTTCACTATGGTTCCACAAAATGAACTCAAATTGCTTCCTACTTAT
TCAACAATGGTCCATTAGCTATTGCAGCTGATGCTGAAGAATGGCAATTCTATATGGGAG
GTGTTTTCGATTTCCCATGTGGTCAAACTTTAGATCACGGTATCTTAATTGTTGGTTATG
GTGCTCAAGATACCATCGTCGGTAAAAATACTCCATACTGGATCATTAAAAACTCATGGG
GTGCCGATTGGGGTGAAGCTGGTTACTTAAAAGTTGAAAGAAATACTGATAAATGTGGTG
TTGCCAATTTCGTTTCTTCATCAATTGTTGGTTCATCAAACTAAAAACAATAAATAAAAT
TTTATTAAATTTTTAATTTTATTTTTTTATATAAAAAAA