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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL592
Library SS
(Link to library)
Clone ID SSL592
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14332-1
Original site URL
Representative seq. ID SSL592E
(Link to Original site)
Representative DNA sequence 
>SSL592 (SSL592Q) /CSM/SS/SSL5-D/SSL592Q.Seq.d/
AAAACATATATATATAAATATATATGTTTTTAACATTGATACATTTGTGGACGAGTAAAA
ATACTGTTATAATATTTATTTGTACCTTGAATGGAATTTAAATCAAATGAAACAATGTTA
AAAACATATATATATAAATATATAATTAAAAAAAAAAAAAAAAAAAATTAAAAAATTAAC
ACTTGGTCGACTTAAACAAAACTGTATAACTTTATAAATAAAAAAAATTAATTTATTAAA
AAAA
sequence update 1998. 4.21
Translated Amino Acid sequence 
niyi*IYMFLTLIHLWTSKNTVIIFICTLNGI*ik*nnvkniyi*iyn*kkkkkklkn*h
lvdlnktv*lyk*kkliy*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ktyiykyicf*h*yicgrvkill*ylfvp*mefksnetmlktyiykyiikkkkkkn*kin
twst*tklynfinkkn*fikk


Frame B:
khiyiniyvfnidtfvde*kycyniylylewnlnqmkqc*khiyini*lkkkkkkikklt
lgrlkqncitl*ikkinllkk


Frame C:
niyi*IYMFLTLIHLWTSKNTVIIFICTLNGI*ik*nnvkniyi*iyn*kkkkkklkn*h
lvdlnktv*lyk*kkliy*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL592 (SSL592Q) /CSM/SS/SSL5-D/SSL592Q.Seq.d/                        198   3e-50
SSC446 (SSC446Q) /CSM/SS/SSC4-B/SSC446Q.Seq.d/                        176   1e-43
CHH566 (CHH566Q) /CSM/CH/CHH5-C/CHH566Q.Seq.d/                        176   1e-43
SSD502 (SSD502Q) /CSM/SS/SSD5-A/SSD502Q.Seq.d/                        168   2e-41
SSC753 (SSC753Q) /CSM/SS/SSC7-C/SSC753Q.Seq.d/                        139   2e-32
SHL760 (SHL760Q) /CSM/SH/SHL7-C/SHL760Q.Seq.d/                         34   0.91
SHL107 (SHL107Q) /CSM/SH/SHL1-A/SHL107Q.Seq.d/                         34   0.91
SHK574 (SHK574Q) /CSM/SH/SHK5-D/SHK574Q.Seq.d/                         34   0.91
SHJ447 (SHJ447Q) /CSM/SH/SHJ4-B/SHJ447Q.Seq.d/                         34   0.91
SHJ213 (SHJ213Q) /CSM/SH/SHJ2-A/SHJ213Q.Seq.d/                         34   0.91
own update 2002.12.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   161  4e-34  3
AL445223|AL445223.6 Human DNA sequence from clone RP11-573N10 on chromosome 13 Contains  STSs and GSSs.    52  0.003  1
BB698420|BB698420.1 Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120499O05, 3' end partial sequence.    48  0.048  1
AC022669|AC022669.4 Homo sapiens chromosome 15 clone RP11-96B23 map 15, WORKING DRAFT SEQUENCE, 33 unordered pieces.    52  0.048  2
AC020560|AC020560.3 Homo sapiens chromosome 18 clone RP11-563H6, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44  0.75  1
AL162413|AL162413.26 Human DNA sequence from clone RP11-109M17 on chromosome 9.    44  0.75  1
AC091042|AC091042.6 Homo sapiens chromosome 18, clone RP11-563H6, complete sequence.    44  0.75  1
AC128242|AC128242.3 Rattus norvegicus clone CH230-519J18, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  0.76  3
AQ504635|AQ504635.1 RPCI-11-315M20.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-315M20, genomic survey sequence.    34  1.0  2
AC134086|AC134086.2 Rattus norvegicus clone CH230-429A14, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    48  1.5  4
dna update 2003. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116960_29(AC116960|pid:none) Dictyostelium discoideum chromoso...    56   4e-07
AC116305_148(AC116305|pid:none) Dictyostelium discoideum chromos...    36   0.47
AC116305_150(AC116305|pid:none) Dictyostelium discoideum chromos...    35   0.81
AX647815_1(AX647815|pid:none) Sequence 2007 from Patent EP1270724.     33   4.2
AK127397_1(AK127397|pid:none) Homo sapiens cDNA FLJ45488 fis, cl...    32   5.4
AE014188_206(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.1
protein update 2009. 7. 9
PSORT 

 psg: 0.96  gvh: 0.48  alm: 0.40  top: 0.57  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSL592 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSL592E
Full length Seq. 
>SSL592E.Seq
AAAACATATATATATAAATATATATGTTTTTAACATTGATACATTTGTGGACGAGTAAAA
ATACTGTTATAATATTTATTTGTACCTTGAATGGAATTTAAATCAAATGAAACAATGTTA
AAAACATATATATATAAATATATAATTAAAAAAAAAAAAAAAAAAAATTAAAAAATTAAC
ACTTGGTCGACTTAAACAAAACTGTATAACTTTATAAATAAAAAAAATTAATTTATTAAA
AAAA
Length of full length seq. 244