>SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/
TGAAAAAGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACCAACATGTGA
TAGCATTGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAAAGAAACACC
GGATTTAATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAATACAACAAA
ATTATTTTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGCTCAAAAATC
AAAATCACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGAAATTTGTCA
AGTATTTGTTAGTAAATTGGAATCATATATTTCAACAAATAAATCACAAGAAGAAATAAT
GGAAGAATTAGATAATGCCTGTGATTATATGAAGAGTTTTGAACAACAATGTAAACAAAT
GGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTCCACTACTGAAGACCCTAATAA
AGTTTGTTCCCAAATTTCCTTATGTCCAAATGACCTATCTTCTAAAAATGAATCAAAAAA
TCAAAGACTTTTAAAAAAAAACATAATCAATTAATAAATTATTAATTTCTAATTTCTGAA
ACAAGTTTTTATTATTATTAAAAAAAA

EKELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDLICKEIKVCTTEWEINTTK
LFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVFVSKLESYISTNKSQEEIM
EELDNACDYMKSFEQQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNDLSSKNESKN
QRLLKKNIIN**iinf*flkqvfiiikk

Frame A:
*krt**iv*ygfstl*tnm**hcfcihn*nytinfk*rntgfnl*rdksmyn*mgn*ynk
iifkny*nchernsfssskikitsinsk*fkiyk*v*nlssic**igiiyfnk*itrrnn
grir*cl*lyeef*ttm*tngsrlcprin*nhvhy*rp**slfpnflmsk*pif*k*ikk
sktfkkkhnqliny*flisetsfyyy*kk


Frame B:
EKELDKLCNMVSPRYKPTCDSIVSVYTTEIIQLILNKETPDLICKEIKVCTTEWEINTTK
LFSKITEIAMKEIHSVAQKSKSHQLTQNNLRSTSECEICQVFVSKLESYISTNKSQEEIM
EELDNACDYMKSFEQQCKQMVQDYVPELIEIMSTTEDPNKVCSQISLCPNDLSSKNESKN
QRLLKKNIIN**iinf*flkqvfiiikk


Frame C:
kknlincviwflhvinqhvialflytqlklyn*f*ikkhri*fvkr*kyvqlngkliqqn
yfqkllklp*kkfiq*lknqnhin*lkii*dlqvsvkfvkyllvnwnhifqqinhkkk*w
kn*impvii*rvlnnnvnkwfkimsqn*lkscpllktlikfvpkfpyvqmtyllkmnqki
kdf*kkt*sinkllisnf*nkfllllkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL531 (SSL531Q) /CSM/SS/SSL5-B/SSL531Q.Seq.d/                       1174   0.0
SSE760 (SSE760Q) /CSM/SS/SSE7-C/SSE760Q.Seq.d/                       1174   0.0
SSF545 (SSF545Q) /CSM/SS/SSF5-B/SSF545Q.Seq.d/                       1168   0.0
SSF304 (SSF304Q) /CSM/SS/SSF3-A/SSF304Q.Seq.d/                       1144   0.0
SSE882 (SSE882Q) /CSM/SS/SSE8-D/SSE882Q.Seq.d/                       1142   0.0
SSD258 (SSD258Q) /CSM/SS/SSD2-C/SSD258Q.Seq.d/                       1120   0.0
CHG343 (CHG343Q) /CSM/CH/CHG3-B/CHG343Q.Seq.d/                       1100   0.0
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                       1041   0.0
SSA866 (SSA866Q) /CSM/SS/SSA8-C/SSA866Q.Seq.d/                        989   0.0
SSC184 (SSC184Q) /CSM/SS/SSC1-D/SSC184Q.Seq.d/                        969   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   9e-10  21
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   7e-09  16
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   9e-09  15
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-08  17
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             36   2e-08  16
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   5e-08  12
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    36   7e-08  16
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    34   7e-07  17
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36   1e-06  10
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   1e-06  19

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    84   4e-15
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    84   4e-15
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    84   4e-15
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ...    84   4e-15
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains:   Rec...    84   4e-15
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ...    84   4e-15
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act...    84   4e-15
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c...    84   4e-15
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1...    83   7e-15
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet...    82   1e-14

 psg: 0.75  gvh: 0.27  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSL531 is cyt

>SSL531E.Seq
TGAAAAAGAACTTGATAAATTGTGTAATATGGTTTCTCCACGTTATAAACCAACATGTGA
TAGCATTGTTTCTGTATACACAACTGAAATTATACAATTAATTTTAAATAAAGAAACACC
GGATTTAATTTGTAAAGAGATAAAAGTATGTACAACTGAATGGGAAATTAATACAACAAA
ATTATTTTCAAAAATTACTGAAATTGCCATGAAAGAAATTCATTCAGTAGCTCAAAAATC
AAAATCACATCAATTAACTCAAAATAATTTAAGATCTACAAGTGAGTGTGAAATTTGTCA
AGTATTTGTTAGTAAATTGGAATCATATATTTCAACAAATAAATCACAAGAAGAAATAAT
GGAAGAATTAGATAATGCCTGTGATTATATGAAGAGTTTTGAACAACAATGTAAACAAAT
GGTTCAAGATTATGTCCCAGAATTAATTGAAATCATGTCCACTACTGAAGACCCTAATAA
AGTTTGTTCCCAAATTTCCTTATGTCCAAATGACCTATCTTCTAAAAATGAATCAAAAAA
TCAAAGACTTTTAAAAAAAAACATAATCAATTAATAAATTATTAATTTCTAATTTCTGAA
ACAAGTTTTTATTATTATTAAAAAAAA