>SSL523 (SSL523Q) /CSM/SS/SSL5-A/SSL523Q.Seq.d/
XXXXXXXXXXAAAAAAAAAATTTTAAAAAAAACAATTGTTTTTTTTTTTTTTTTTTGTAG
TTGTTGTATATTATAATTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTTTCTAAAAAAAAA
AAAAAAAGCATAATAATAATTATTATTATTTATTTGTGTATATATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACTCCATATAATCTATTAA

---kknfkknncfffffl*LLYIIIFFFFFFSFLLSKKKKKSIIIIIIIYLCIYKKKKKK
KKKNSI*si

Frame A:
---kkkf*kkqlffffffvvvvyynffffffffssf*kkkkkhnnnyyylfvyi*kkkkk
kkkklhiiy*


Frame B:
---kknfkknncfffffl*LLYIIIFFFFFFSFLLSKKKKKSIIIIIIIYLCIYKKKKKK
KKKNSI*si


Frame C:
---kkilkktivfffffcsccil*ffffffflffflkkkkka***lllficvyikkkkkk
kkktpynll

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL523 (SSL523Q) /CSM/SS/SSL5-A/SSL523Q.Seq.d/                         76   2e-13
VHP772 (VHP772Q) /CSM/VH/VHP7-C/VHP772Q.Seq.d/                         46   2e-04
VHP575 (VHP575Q) /CSM/VH/VHP5-D/VHP575Q.Seq.d/                         46   2e-04
VHI727 (VHI727Q) /CSM/VH/VHI7-B/VHI727Q.Seq.d/                         46   2e-04
VSK455 (VSK455Q) /CSM/VS/VSK4-C/VSK455Q.Seq.d/                         44   8e-04
VSJ360 (VSJ360Q) /CSM/VS/VSJ3-C/VSJ360Q.Seq.d/                         44   8e-04
VSC273 (VSC273Q) /CSM/VS/VSC2-D/VSC273Q.Seq.d/                         44   8e-04
VSA132 (VSA132Q) /CSM/VS/VSA1-B/VSA132Q.Seq.d/                         44   8e-04
VHK510 (VHK510Q) /CSM/VH/VHK5-A/VHK510Q.Seq.d/                         44   8e-04
VFM568 (VFM568Q) /CSM/VF/VFM5-C/VFM568Q.Seq.d/                         44   8e-04

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.    76  2e-20  5
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    76  1e-13  5
AL477382|AL477382.1 T. brucei sheared genomic DNA clone 192b03, forward sequence.    42  7e-05  3
AL476383|AL476383.1 T. brucei sheared genomic DNA clone 205d08, reverse sequence.    42  1e-04  3
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    44  2e-04  4
Z98547|Z98547.2 Plasmodium falciparum MAL3P3.                     42  2e-04  4
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  2e-04  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  2e-04  4
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  2e-04  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44  5e-04  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 46,310,753

 psg: 1.05  gvh: 0.67  alm: 0.39  top: 0.80  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.44  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for SSL523 is nuc

>SSL523Z.Seq
----------AAAAAAAAAATTTTAAAAAAAACAATTGTTTTTTTTTTTTTTTTTTGTAG
TTGTTGTATATTATAATTTTTTTTTTTTTTTTTTTTTCTTTTCTTCTTTCTAAAAAAAAA
AAAAAAAGCATAATAATAATTATTATTATTTATTTGTGTATATATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAACTCCATATAATCTATTAA