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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL503
Library SS
(Link to library)
Clone ID SSL503
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SSL503E
(Link to Original site)
Representative DNA sequence 
>SSL503 (SSL503Q) /CSM/SS/SSL5-A/SSL503Q.Seq.d/
GTTATTTTCAATTCCAAAATCAAAAGAATTTCTAATTCAGATCTCAGAAGTAGTGTAGTG
GACGGGAATAATATTTCACATTTCATCAAAAAGTATTTCTTGAGACCCCCTGGAATTTCT
GTTGATGAAAAGGAAAAGTTACTAGAACGTTTAACTGATAGTTAAATCGTGTATCTCCGG
AAATTTTCGAGTATTTTATTCATTTAAAGAATTATGAACCAGGTGTAATAATGAAAGGAC
TCAAAAATACACTTCCTATGCCAAATCTCATACCATACTATATTGGTTCTAAGCTTGATN
GTCATCTTATACAAATTAATTGTAAAAATATATTTCACAAAGAGGATCTAATGAATATAC
TCTAAAAGAATAATTCAAATAATATCAACTGTGATGTACACTCCAAAAAAGCTTTAGTTA
AATGTGCTAGGTTGTAATTCAATAATCTGTTGTGANTGCCTTGTTTCNCATCCTCCTTAT
CTTTCTCATCCTCCTTATCTTTCTCAAAANTTAGAGCTAATTAACCCAACTATNAATAAT
GATAATGATAATGATAATGATAATGATAATGATAATGATAATGATAATAATNATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATGATAATGATGATATGATGAATTCTTTTAAAATTGTAAAAAACTAA
TAATAAAAGTAACCAAGGAATAAATCTATATTATTTAAAAAAAAAAAAAAAAA
sequence update 1999. 6.25
Translated Amino Acid sequence 
vifnskikrisnsdlrssvvdgnnishfikkyflrppgisvdekekllerltds*ivylr
kfssilfi*rimnqv***kdskihflcqisyhtilvlslxvilyklivkiyftkri**iy
skriiqiistvmytpkkl*LNVLGCNSIICCXCLVSHPPYLSHPPYLSQXLELINPTXNN
DNDNDNDNDNDNDNDNNXNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNDNDDMMNSFKIVKN***k*prnksilfkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vifnskikrisnsdlrssvvdgnnishfikkyflrppgisvdekekllerltds*ivylr
kfssilfi*rimnqv***kdskihflcqisyhtilvlslxvilyklivkiyftkri**iy
skriiqiistvmytpkkl*LNVLGCNSIICCXCLVSHPPYLSHPPYLSQXLELINPTXNN
DNDNDNDNDNDNDNDNNXNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNDNDDMMNSFKIVKN***k*prnksilfkkkkk


Frame B:
lfsipkskefliqisevv*wtgiifhissksis*dplefllmkrksy*nv*livkscisg
nfrvfysfkel*trcnnertqkytsyakshtilywf*a*xssytn*l*kyisqrgsneyt
lke*fk*yql*ctlqksfs*mc*vviq*svvxalfxilliflilliflkx*s*ltqlxim
imimimimimimimiixiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiimimmi**illkl*ktnnksnqginlyylkkkkk


Frame C:
yfqfqnqknf*frsqk*csgre*yftfhqkvfletpwnfc**kgkvtrtfn**lnrvspe
ifeyfihlknyepgvimkglkntlpmpnlipyyigskldxhliqincknifhkedlmnil
*knnsnnincdvhskkalvkcarl*fnnll*xpcfxsslsfssslsfskxran*pnyx**
****************x*******************************************
********ydeff*nckkliikvtke*iyii*kkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL503 (SSL503Q) /CSM/SS/SSL5-A/SSL503Q.Seq.d/                       1033   0.0
VSF195 (VSF195Q) /CSM/VS/VSF1-D/VSF195Q.Seq.d/                         38   0.21
VHM751 (VHM751Q) /CSM/VH/VHM7-C/VHM751Q.Seq.d/                         38   0.21
VFM264 (VFM264Q) /CSM/VF/VFM2-C/VFM264Q.Seq.d/                         38   0.21
SSJ106 (SSJ106Q) /CSM/SS/SSJ1-A/SSJ106Q.Seq.d/                         38   0.21
SLD585 (SLD585Q) /CSM/SL/SLD5-D/SLD585Q.Seq.d/                         38   0.21
CHO516 (CHO516Q) /CSM/CH/CHO5-A/CHO516Q.Seq.d/                         38   0.21
VSK194 (VSK194Q) /CSM/VS/VSK1-D/VSK194Q.Seq.d/                         36   0.83
VSI718 (VSI718Q) /CSM/VS/VSI7-A/VSI718Q.Seq.d/                         36   0.83
VSI471 (VSI471Q) /CSM/VS/VSI4-C/VSI471Q.Seq.d/                         36   0.83
own update 2002.12.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34  0.030  8
AQ951475|AQ951475.1 Sheared DNA-32D16.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-32D16, genomic survey sequence.    50  0.045  1
AL467059|AL467059.1 T. brucei sheared genomic DNA clone 145c06, reverse sequence.    50  0.045  1
AQ947207|AQ947207.1 Sheared DNA-49E15.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-49E15, genomic survey sequence.    50  0.045  1
AL472103|AL472103.1 T. brucei sheared genomic DNA clone 150f06, forward sequence.    50  0.045  1
AC136135|AC136135.2 Rattus norvegicus clone CH230-11N8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    54  0.055  4
AC126858|AC126858.6 Rattus norvegicus clone CH230-81B3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    54  0.058  4
AC010652|AC010652.6 Homo sapiens chromosome 16 clone RP11-415E16, WORKING DRAFT SEQUENCE, 30 unordered pieces.    40  0.084  5
AQ565999|AQ565999.1 HS_5371_B1_G05_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=947 Col=9 Row=N, genomic survey sequence.    48  0.18  1
AL489592|AL489592.1 T. brucei sheared genomic DNA clone 297e07, reverse sequence.    48  0.18  1
dna update 2003. 9.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF083031_86(AF083031|pid:none) Guillardia theta nucleomorph chro...    34   5.2
CP001157_1267(CP001157|pid:none) Azotobacter vinelandii DJ, comp...    34   6.7
protein update 2009. 7. 9
PSORT 

 psg: 0.94  gvh: 0.49  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSL503 is cyt
5' end seq. ID SSL503F
5' end seq. 
>SSL503F.Seq
GTTATTTTCAATTCCAAAATCAAAAGAATTTCTAATTCAGATCTCAGAAGTAGTGTAGTG
GACGGGAATAATATTTCACATTTCATCAAAAAGTATTTCTTGAGACCCCCTGGAATTTCT
GTTGATGAAAAGGAAAAGTTACTAGAACGTTTAACTGATAGTTAAATCGTGTATCTCCGG
AAATTTTCGAGTATTTTATTCATTTAAAGAATTATGAACCAGGTGTAATAATGAAAGGAC
TCAAAAATACACTTCCTATGCCAAATCTCATACCATACTATATTGGTTCTAAGCTTGATN
GTCATCTTATACAAATTAATTGTAAAAATATATTTCACAAAGAGGATCTAATGAATATAC
TCTAAAAGAATAATTCAAATAATATCAACTGTGATGTACACTCCAAAAAAGCTTTAGTTA
AATGTGCTAGGTTGTAATTCAATAATCTGTTGTGANTGCCTTGTTTCNCATCCTCCTTAT
CTTTCTCATCCTCCTTATCTTTCTCAAAANTTAGAGCTAATTAACCCAACTATCAATAAT
GATAATGATAATGATAATGATAATGATAATGATAATGATAATGATAATAATTANAATAAT
AATAATAATAATAATAATAATAATAATAA----------
Length of 5' end seq. 629
3' end seq. ID SSL503Z
3' end seq. 
>SSL503Z.Seq
----------ACTATTAATAATGATAATGATAATGATAATGATAATGATAATGATAATGA
TAATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATGATAATGATGATATGATGAATTC
TTTTAAAATTGTAAAAAACTAATAATAAAAGTAACCAAGGAATAAATCTATATTATTTAA
AAAAAAAAAAAAAAA
Length of 3' end seq. 305
Connected seq. ID SSL503P
Connected seq. 
>SSL503P.Seq
GTTATTTTCAATTCCAAAATCAAAAGAATTTCTAATTCAGATCTCAGAAGTAGTGTAGTG
GACGGGAATAATATTTCACATTTCATCAAAAAGTATTTCTTGAGACCCCCTGGAATTTCT
GTTGATGAAAAGGAAAAGTTACTAGAACGTTTAACTGATAGTTAAATCGTGTATCTCCGG
AAATTTTCGAGTATTTTATTCATTTAAAGAATTATGAACCAGGTGTAATAATGAAAGGAC
TCAAAAATACACTTCCTATGCCAAATCTCATACCATACTATATTGGTTCTAAGCTTGATN
GTCATCTTATACAAATTAATTGTAAAAATATATTTCACAAAGAGGATCTAATGAATATAC
TCTAAAAGAATAATTCAAATAATATCAACTGTGATGTACACTCCAAAAAAGCTTTAGTTA
AATGTGCTAGGTTGTAATTCAATAATCTGTTGTGANTGCCTTGTTTCNCATCCTCCTTAT
CTTTCTCATCCTCCTTATCTTTCTCAAAANTTAGAGCTAATTAACCCAACTATCAATAAT
GATAATGATAATGATAATGATAATGATAATGATAATGATAATGATAATAATTANAATAAT
AATAATAATAATAATAATAATAATAATAA----------ACTATTAATAATGATAATGAT
AATGATAATGATAATGATAATGATAATGATAATGATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATGATAATGATGATATGATGAATTCTTTTAAAATTGTAAAAAACTAATAATAAAAG
TAACCAAGGAATAAATCTATATTATTTAAAAAAAAAAAAAAAAA
Length of connected seq. 934
Full length Seq ID SSL503E
Full length Seq. 
>SSL503E.Seq
GTTATTTTCAATTCCAAAATCAAAAGAATTTCTAATTCAGATCTCAGAAGTAGTGTAGTG
GACGGGAATAATATTTCACATTTCATCAAAAAGTATTTCTTGAGACCCCCTGGAATTTCT
GTTGATGAAAAGGAAAAGTTACTAGAACGTTTAACTGATAGTTAAATCGTGTATCTCCGG
AAATTTTCGAGTATTTTATTCATTTAAAGAATTATGAACCAGGTGTAATAATGAAAGGAC
TCAAAAATACACTTCCTATGCCAAATCTCATACCATACTATATTGGTTCTAAGCTTGATN
GTCATCTTATACAAATTAATTGTAAAAATATATTTCACAAAGAGGATCTAATGAATATAC
TCTAAAAGAATAATTCAAATAATATCAACTGTGATGTACACTCCAAAAAAGCTTTAGTTA
AATGTGCTAGGTTGTAATTCAATAATCTGTTGTGANTGCCTTGTTTCNCATCCTCCTTAT
CTTTCTCATCCTCCTTATCTTTCTCAAAANTTAGAGCTAATTAACCCAACTATNAATAAT
GATAATGATAATGATAATGATAATGATAATGATAATGATAATGATAATAATNATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATGATAATGATGATATGATGAATTCTTTTAAAATTGTAAAAAACTAA
TAATAAAAGTAACCAAGGAATAAATCTATATTATTTAAAAAAAAAAAAAAAAA
Length of full length seq. 833