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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL481
Library SS
(Link to library)
Clone ID SSL481
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16249-1
Original site URL
Representative seq. ID SSL481P
(Link to Original site)
Representative DNA sequence 
>SSL481 (SSL481Q) /CSM/SS/SSL4-D/SSL481Q.Seq.d/
ATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATATAAATA
AATAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTT
CACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGAAAACA
TAAATXXXXXXXXXXGGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGA
GCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAAACA
CATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAAAATAAAAAAA
AAATAAACACCTCCTTTTTTATTATTAATTTTTTATTTTATTTTCAAAAAAAA
sequence update 1999. 1.19
Translated Amino Acid sequence 
kqtkqtdni*nk*ikfyink*KKMIKLFCISAILFIFIFSLGESTLIRPNFYYRIDWENI
N---

---GMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivkkkkikkk*
tppflllifyfifkk
Translated Amino Acid sequence (All Frames) 
Frame A:
inkqskqtiykink*nfi*inkkk**nyfvyqqyclysffhlvkvh*ldqifiieligkt
*---

---GMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*tivkkkkikkk*
tppflllifyfifkk

Frame B:
*tnkanrqyik*inkilyk*ikkndkiilyisnivyihfftw*kyid*tkfll*n*lgkh
k---

---vchfvqqviv*inseqlkqmdvqniiviqplfvkhinfffc*fskql*kkkk*kknk
hllfyy*ffilfskk

Frame C:
kqtkqtdni*nk*ikfyink*KKMIKLFCISAILFIFIFSLGESTLIRPNFYYRIDWENI
N---

---yatlssrlsfrsiqsn*skwmskill*snlcl*ntlisffvnflnnckkkknkkkin
tsffiinflfyfqkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL481 (SSL481Q) /CSM/SS/SSL4-D/SSL481Q.Seq.d/                        426   e-118
SSM753 (SSM753Q) /CSM/SS/SSM7-C/SSM753Q.Seq.d/                        242   3e-63
SSM747 (SSM747Q) /CSM/SS/SSM7-B/SSM747Q.Seq.d/                        242   3e-63
SSM721 (SSM721Q) /CSM/SS/SSM7-A/SSM721Q.Seq.d/                        242   3e-63
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                        242   3e-63
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                        242   3e-63
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                        242   3e-63
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                        242   3e-63
SSL737 (SSL737Q) /CSM/SS/SSL7-B/SSL737Q.Seq.d/                        242   3e-63
SSL633 (SSL633Q) /CSM/SS/SSL6-B/SSL633Q.Seq.d/                        242   3e-63
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   228  e-116  3
BU128591|BU128591.1 603112762F1 CSEQCHL20 Gallus gallus cDNA clone ChEST62k15 5', mRNA sequence.    34  0.98  2
AC092100|AC092100.5 Homo sapiens BAC clone RP11-666G4 from 7, complete sequence.    44  1.3  1
AC027169|AC027169.2 Homo sapiens chromosome 11 clone RP11-315F19 map 11, WORKING DRAFT SEQUENCE, 34 unordered pieces.    44  1.3  1
AC128897|AC128897.3 Rattus norvegicus clone CH230-288O6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  2.7  2
AC102891|AC102891.2 Mus musculus clone RP24-363B22, WORKING DRAFT SEQUENCE, 38 unordered pieces.    42  5.2  1
CB291442|CB291442.1 UCRCS01_02dg03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02dg03, mRNA sequence.    42  5.2  1
CB293485|CB293485.1 UCRCS01_06ag01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ag01, mRNA sequence.    42  5.2  1
CB293416|CB293416.1 UCRCS01_06ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac11, mRNA sequence.    42  5.2  1
CB291577|CB291577.1 UCRCS01_03af02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03af02, mRNA sequence.    42  5.2  1
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    87   1e-16
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    57   2e-07
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    39   0.074
AM494972_348(AM494972|pid:none) Leishmania braziliensis chromoso...    34   1.4
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    32   9.0
protein update 2009. 2. 3
PSORT 

 psg: 1.01  gvh: 0.58  alm: 0.20  top: 0.27  tms: 0.07  mit: 0.35  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SSL481 is end
5' end seq. ID SSL481F
5' end seq. 
>SSL481F.Seq
ATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATATAAATA
AATAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTT
CACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGAAAACA
TAAAT----------
Length of 5' end seq. 185
3' end seq. ID SSL481Z
3' end seq. 
>SSL481Z.Seq
----------GGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGAGCAAC
TGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAAACACATTA
ATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAAAATAAAAAAAAAATA
AACACCTCCTTTTTTATTATTAATTTTTTATTTTATTTTCAAAAAAAA
Length of 3' end seq. 218
Connected seq. ID SSL481P
Connected seq. 
>SSL481P.Seq
ATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATATAAATA
AATAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTT
CACTTGGTGAAAGTACATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGAAAACA
TAAAT----------GGTATGCCACTTTGTCCAGCAGGTTATCGTTTAGATCAATTCAGA
GCAACTGAAGCAAATGGATGTCCAAAATATTATTGTGATCCAACCTTTGTTTGTAAAACA
CATTAATTTCTTTTTTTGTTAATTTTCTAAACAATTGTAAAAAAAAAAAAAATAAAAAAA
AAATAAACACCTCCTTTTTTATTATTAATTTTTTATTTTATTTTCAAAAAAAA
Length of connected seq. 403
Full length Seq ID -
Full length Seq. -
Length of full length seq. -