>SSL472 (SSL472Q) /CSM/SS/SSL4-C/SSL472Q.Seq.d/
GAAAAAAAAAAAAAAAAGCATCACATTATATCTCCAACCAAAACACAGAAAACAATAGTA
ATAATATAATTACCAATTTATCATAATAGTATTATTAAACTACAAACCTTTTTATTAAAA
TTTTTTTATTTTTTAAATTAATTATATTCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAXXXXXXXXXX

kkkkkashyisnqntennsnniitnls**yy*TTNLFIKIFLFFKLIIFEKKKKKKKKKK
---

Frame A:
ekkkkkhhiisptktqktivii*lpiyhnsiiklqtfllkffyfln*lysrkkkkkkkkk
k---


Frame B:
kkkkksitlylqpkhrkq***ynyqfiiivllnykpfy*nffif*inyirekkkkkkkkk
k---


Frame C:
kkkkkashyisnqntennsnniitnls**yy*TTNLFIKIFLFFKLIIFEKKKKKKKKKK
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL472 (SSL472Q) /CSM/SS/SSL4-C/SSL472Q.Seq.d/                        180   5e-45
SHF715 (SHF715Q) /CSM/SH/SHF7-A/SHF715Q.Seq.d/                        161   5e-39
SSH371 (SSH371Q) /CSM/SS/SSH3-C/SSH371Q.Seq.d/                         38   0.046
SFJ480 (SFJ480Q) /CSM/SF/SFJ4-D/SFJ480Q.Seq.d/                         38   0.046
SSA834 (SSA834Q) /CSM/SS/SSA8-B/SSA834Q.Seq.d/                         36   0.18
CHP544 (CHP544Q) /CSM/CH/CHP5-B/CHP544Q.Seq.d/                         36   0.18
CHP133 (CHP133Q) /CSM/CH/CHP1-B/CHP133Q.Seq.d/                         36   0.18
CHG344 (CHG344Q) /CSM/CH/CHG3-B/CHG344Q.Seq.d/                         36   0.18
CHB882 (CHB882Q) /CSM/CH/CHB8-D/CHB882Q.Seq.d/                         36   0.18
CFI859 (CFI859Q) /CSM/CF/CFI8-C/CFI859Q.Seq.d/                         36   0.18

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA760065|CA760065.1 BR060004A20A12.ab1 IRRI clones Oryza sativa (indica cultivar-group) cDNA clone BR060004A20A12.ab1 similar to hypothetical protein [Oryza sativa (japonica, mRNA sequence.    44  0.59  1
AK070059|AK070059.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023042A02, full insert sequence.    44  0.59  1
AP003767|AP003767.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.59  1
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38  1.2  4
BX005232|BX005232.7 Zebrafish DNA sequence from clone CH211-172G24.    30  2.0  5
BE358646|BE358646.1 DG1_30_G08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.    42  2.3  1
BM273800|BM273800.1 PfESToaa59g04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:O96129 O96129 PREDICTED MEMBRANE ASSOCIATED PROTEIN. ;, mRNA sequence.    42  2.3  1
AF183909|AF183909.1 Argopecten irradians MHC gene, alternatively spliced products: myosin heavy chain, partial cds and catchin, complete cds.    42  2.3  1
BM273512|BM273512.1 PfESToaa51g03.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:O96129 O96129 PREDICTED MEMBRANE ASSOCIATED PROTEIN. ;, mRNA sequence.    42  2.3  1
AE001374|AE001374.1 Plasmodium falciparum chromosome 2, section 11 of 73 of the complete sequence.    42  2.3  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 132,802,105

 psg: 0.90  gvh: 0.31  alm: 0.32  top: 1.00  tms: 0.07  mit: 0.33  mip: 0.00
 nuc: 0.65  erl: 0.00  erm: 1.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSL472 is nuc

>SSL472F.Seq
GAAAAAAAAAAAAAAAAGCATCACATTATATCTCCAACCAAAACACAGAAAACAATAGTA
ATAATATAATTACCAATTTATCATAATAGTATTATTAAACTACAAACCTTTTTATTAAAA
TTTTTTTATTTTTTAAATTAATTATATTCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA----------