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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL432
Library SS
(Link to library)
Clone ID SSL432
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSL432E
(Link to Original site)
Representative DNA sequence 
>SSL432 (SSL432Q) /CSM/SS/SSL4-B/SSL432Q.Seq.d/
AATCAAATGACATCAGGTGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCCAATA
AACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTC
CGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCT
TTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAA
GATCTGTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAAAAAAA
sequence update 1998. 4.25
Translated Amino Acid sequence 
NQMTSGGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqks
lfnaknsryllyflil*i**dls*ikkikffyklkk
Translated Amino Acid sequence (All Frames) 
Frame A:
NQMTSGGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqks
lfnaknsryllyflil*i**dls*ikkikffyklkk


Frame B:
ik*hqvesynqakishnvq*tanmagdqqqevpqihvaisvvtltildsfavyf*ifrnl
clmpkivdiyyifsfyksdkiclk*kksnffin*k


Frame C:
sndirwnrttrpkslttsnkrpiwlgtssrkcrkstwrspwlhlqy*ivslsiseyseif
v*cqk**isiifshfinlirsvlnkknqifl*ikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE623 (VSE623Q) /CSM/VS/VSE6-A/VSE623Q.Seq.d/                        494   e-139
VHM579 (VHM579Q) /CSM/VH/VHM5-D/VHM579Q.Seq.d/                        494   e-139
SSM657 (SSM657Q) /CSM/SS/SSM6-C/SSM657Q.Seq.d/                        494   e-139
SSM458 (SSM458Q) /CSM/SS/SSM4-C/SSM458Q.Seq.d/                        494   e-139
SSL432 (SSL432Q) /CSM/SS/SSL4-B/SSL432Q.Seq.d/                        494   e-139
SSL389 (SSL389Q) /CSM/SS/SSL3-D/SSL389Q.Seq.d/                        494   e-139
SSH363 (SSH363Q) /CSM/SS/SSH3-C/SSH363Q.Seq.d/                        494   e-139
SSH141 (SSH141Q) /CSM/SS/SSH1-B/SSH141Q.Seq.d/                        494   e-139
SSC566 (SSC566Q) /CSM/SS/SSC5-C/SSC566Q.Seq.d/                        494   e-139
SSB751 (SSB751Q) /CSM/SS/SSB7-C/SSB751Q.Seq.d/                        494   e-139
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   488  e-134  1
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.   480  e-132  1
AC108886|AC108886.2 Rattus norvegicus clone RP31-392N9 strain Brown Norway, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.070  2
AC129135|AC129135.4 Rattus norvegicus clone CH230-23C19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.099  2
AQ112874|AQ112874.1 CIT-HSP-2376G2.TR CIT-HSP Homo sapiens genomic clone 2376G2, genomic survey sequence.    46  0.23  1
AC121604|AC121604.2 Mus musculus chromosome UNK clone RP23-312E2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50  0.33  2
AC140217|AC140217.1 Mus musculus chromosome UNK clone RP23-279O5, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50  0.43  2
CF225047|CF225047.1 AGENCOURT_15066257 NICHD_XGC_Emb7 Silurana tropicalis cDNA clone IMAGE:6977825 5', mRNA sequence.    44  0.90  1
AC097583|AC097583.2 Rattus norvegicus clone RP31-409E6 strain Brown Norway, WORKING DRAFT SEQUENCE, 10 ordered pieces.    44  0.90  1
AC121674|AC121674.4 Rattus norvegicus clone CH230-265A12, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  0.90  1
dna update 2003. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_51(AC116957|pid:none) Dictyostelium discoideum chromoso...   101   9e-21
protein update 2009. 3. 7
PSORT 

 psg: 0.85  gvh: 0.35  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSL432 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSL432E
Full length Seq. 
>SSL432E.Seq
AATCAAATGACATCAGGTGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCCAATA
AACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTC
CGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCT
TTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTGATAA
GATCTGTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAAAAAAA
Length of full length seq. 288