SSL425
Library SS
(Link to library)
Clone ID SSL425
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10248-1
Original site URL
Representative seq. ID SSL425Z
(Link to Original site)
Representative DNA sequence
>SSL425 (SSL425Q) /CSM/SS/SSL4-B/SSL425Q.Seq.d/
XXXXXXXXXXGTAACAGATCAACTTACATATAATAACGTTAGATTATGGATGCAAGAAAT
TCAAAGATATGCAGTACTTGGCGTTAGTAGAGTTTTAGTTGGAAACAAATGCGATCTCGA
AGATAGAAAATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATTCC
ATTCATGGAAGCTTCTGCTGCAACTGGTGTTAATGTTGAAGAGGCTTTCATGGCAATGGC
AAATGAAATTTATAGAAATCATATGGGTGGTTCAAAACCTTCTGTTGTAAACCCAGGAAG
TGGAGGTACCAGTAACACTGGTGGTAAAAAAAAATTTTGTTAAT
sequence update 1998. 4.25
Translated Amino Acid sequence
---TDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPF
MEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVNPGSGGTSNTGGKKKFC*


Translated Amino Acid sequence (All Frames)
Frame A:
---*qinlhiitldygckkfkdmqylalvef*letnaiskienw*thqlqenmpivlvfh
swklllqlvlmlkrlswqwqmkfieiiwvvqnlll*tqevevpvtlvvkknfvn


Frame B:
---nrstyi**r*imdarnskicstwr**sfswkqmrsrr*kigkhinckricr*swysi
hgsfccnwc*c*rgfhgngk*nl*ksygwfktfcckprkwryq*hww*kkill


Frame C:
---TDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPF
MEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVNPGSGGTSNTGGKKKFC*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL425 (SSL425Q) /CSM/SS/SSL4-B/SSL425Q.Seq.d/ 624 e-178
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/ 624 e-178
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/ 624 e-178
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/ 624 e-178
SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/ 593 e-169
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/ 500 e-141
SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/ 428 e-119
SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/ 373 e-102
VSD572 (VSD572Q) /CSM/VS/VSD5-C/VSD572Q.Seq.d/ 369 e-101
SSG849 (SSG849Q) /CSM/SS/SSG8-C/SSG849Q.Seq.d/ 347 7e-95

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds. 56 4e-08 3
BF067197|BF067197.1 st34c12.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-888 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 3e-05 2
CA786013|CA786013.1 sat42c07.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-3973 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 3e-05 2
BM094849|BM094849.1 saj22d08.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-3615 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 3e-05 2
BE611983|BE611983.1 sr02d07.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1478 5' similar to TR:Q40203 Q40203 RAB1C. ;, mRNA sequence. 42 3e-05 2
BI425236|BI425236.1 saf89h03.y3 Gm-c1079 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1079-1134 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 3e-05 2
CA802315|CA802315.1 sau33h11.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-3045 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 4e-05 2
BI316219|BI316219.1 saf62g05.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-1065 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 4e-05 2
BI425805|BI425805.1 sah72f05.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-4089 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 4e-05 2
BI784715|BI784715.1 saf92d03.y3 Gm-c1079 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1079-1325 5' similar to TR:Q40203 Q40203 RAB1C. [1] ;, mRNA sequence. 42 4e-05 2
dna update 2003. 8.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54E92) RecName: Full=Ras-related protein RabG1; 171 9e-42
(P34140) RecName: Full=Ras-related protein Rab-1B; 115 5e-25
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3... 114 1e-24
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related... 105 5e-22
(P22125) RecName: Full=Ras-related protein ORAB-1; &M38393_1(M3... 105 6e-22
CR382130_329(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 104 8e-22
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 103 1e-21
BC071442_1(BC071442|pid:none) Danio rerio zgc:86773, mRNA (cDNA ... 103 1e-21
AF244545_1(AF244545|pid:none) Aspergillus awamori YptA (yptA) ge... 103 2e-21
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039... 103 2e-21
protein update 2009. 6.15
PSORT

psg: 0.57 gvh: 0.39 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
24.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: peroxisomal

>> prediction for SSL425 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL425Z
3' end seq.
>SSL425Z.Seq
----------GTAACAGATCAACTTACATATAATAACGTTAGATTATGGATGCAAGAAAT
TCAAAGATATGCAGTACTTGGCGTTAGTAGAGTTTTAGTTGGAAACAAATGCGATCTCGA
AGATAGAAAATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATTCC
ATTCATGGAAGCTTCTGCTGCAACTGGTGTTAATGTTGAAGAGGCTTTCATGGCAATGGC
AAATGAAATTTATAGAAATCATATGGGTGGTTCAAAACCTTCTGTTGTAAACCCAGGAAG
TGGAGGTACCAGTAACACTGGTGGTAAAAAAAAATTTTGTTAAT
Length of 3' end seq. 334
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -