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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL401
Library SS
(Link to library)
Clone ID SSL401
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01940-1
Original site URL
Representative seq. ID SSL401P
(Link to Original site)
Representative DNA sequence 
>SSL401 (SSL401Q) /CSM/SS/SSL4-A/SSL401Q.Seq.d/
GTGGTACACTTGATCAATTTATAATTTTTTATGAAAAAATTATATTAAATGGTAATAATA
TTTCAAATTATTTAGGTAATGATAATAGTAATAGTAGTGGTAATAATAGTTCAAATAGTA
GTAAAAATAAAACAATATTTTCGAAATCAATTAATAATTTTAGATATGATATATTAGAAT
ATTTAATTGAAAGAACTGGTTTTATATCAACTACTGCAATATTATCAGATTTAATTXXXX
XXXXXXATAGTGTATTATATTATATCATTTCGAAAGGATTTTATAATATTTTAAATTTCA
TATATCAATCAAATATCAATCATTTTCAATCTTTTGAATTTAAAAACATTGAATTAGTAT
ATAATGGAGTTATCAATAATAAAAACTCTGATAAAATTATTAAATTATTAAATAATATAA
AAAATCATTTTTATCCTCCATCTCCTCCAACTAATGATATAATTTTTAAAAAACAAAAAT
ATAATAACCTTTTTTAATTAACTCTTTATAAAAAAAAAAAAAAAAAAAAACAATAATAAA
ATTAATATCAAAATATTAAATTATTTATATA
sequence update 1999. 1.19
Translated Amino Acid sequence 
GTLDQFIIFYEKIILNGNNISNYLGNDNSNSSGNNSSNSSKNKTIFSKSINNFRYDILEY
LIERTGFISTTAILSDLI---

---SVLYYIISKGFYNILNFIYQSNINHFQSFEFKNIELVYNGVINNKNSDKIIKLLNNI
KNHFYPPSPPTNDIIFKKQKYNNLF*ltlykkkkkkkq**n*yqniklfi
Translated Amino Acid sequence (All Frames) 
Frame A:
vvhlinl*ffmkkly*mviifqii*vmiivivvviivqivvkikqyfrnqliildmiy*n
i*lkelvlyqllqyyqi*---

---ivyyiisfrkdfiif*isyinqisiifnllnlktln*yimelsiiktlikllny*ii
*kiifilhllqlmi*flknkniitffn*lfikkkkkknnnkinikilnyly

Frame B:
wyt*siynfl*knyikw**yfklfr*******w***fk***k*nnifein**f*i*yiri
fn*knwfyinycniirfn---

---*ciilyhferil*yfkfhisikyqsfsif*i*kh*isi*wsyq**kl**ny*iik*y
kksflssissn**ynf*ktki**pflinsl*kkkkkktiiklisky*iiyi

Frame C:
GTLDQFIIFYEKIILNGNNISNYLGNDNSNSSGNNSSNSSKNKTIFSKSINNFRYDILEY
LIERTGFISTTAILSDLI---

---SVLYYIISKGFYNILNFIYQSNINHFQSFEFKNIELVYNGVINNKNSDKIIKLLNNI
KNHFYPPSPPTNDIIFKKQKYNNLF*ltlykkkkkkkq**n*yqniklfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL401 (SSL401Q) /CSM/SS/SSL4-A/SSL401Q.Seq.d/                        714   0.0
SSL489 (SSL489Q) /CSM/SS/SSL4-D/SSL489Q.Seq.d/                        454   e-127
VSK308 (VSK308Q) /CSM/VS/VSK3-A/VSK308Q.Seq.d/                         50   4e-05
VSF750 (VSF750Q) /CSM/VS/VSF7-C/VSF750Q.Seq.d/                         48   1e-04
VHI774 (VHI774Q) /CSM/VH/VHI7-D/VHI774Q.Seq.d/                         48   1e-04
VFH820 (VFH820Q) /CSM/VF/VFH8-A/VFH820Q.Seq.d/                         48   1e-04
SFJ161 (SFJ161Q) /CSM/SF/SFJ1-C/SFJ161Q.Seq.d/                         48   1e-04
SFC584 (SFC584Q) /CSM/SF/SFC5-D/SFC584Q.Seq.d/                         48   1e-04
CFI357 (CFI357Q) /CSM/CF/CFI3-C/CFI357Q.Seq.d/                         48   1e-04
AHN423 (AHN423Q) /CSM/AH/AHN4-A/AHN423Q.Seq.d/                         48   1e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  3e-09  12
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    44  3e-09  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50  1e-08  12
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42  1e-08  11
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           40  4e-08  12
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    44  5e-08  12
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    42  3e-07  9
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    44  4e-07  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  1e-06  14
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    40  2e-06  11
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001205_204(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    36   0.63
CP000962_1695(CP000962|pid:none) Clostridium botulinum A3 str. L...    36   0.82
CR940347_838(CR940347|pid:none) Theileria annulata strain Ankara...    36   0.82
AF211135_3(AF211135|pid:none) Carsonella ruddii natural-host Cte...    35   1.4
AM285313_34(AM285313|pid:none) Spiroplasma citri GII3-3X chromos...    35   1.4
AE017245_4(AE017245|pid:none) Mycoplasma synoviae 53, complete g...    35   1.4
AF211133_4(AF211133|pid:none) Carsonella ruddii natural-host Cte...    35   1.8
A82897(A82897) conserved hypothetical UU403 [imported] - Ureapla...    35   1.8
CR382400_57(CR382400|pid:none) Plasmodium falciparum chromosome ...    35   1.8
AL844505_224(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.8
protein update 2009. 6.15
PSORT 

 psg: 0.75  gvh: 0.21  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SSL401 is nuc
5' end seq. ID SSL401F
5' end seq. 
>SSL401F.Seq
GTGGTACACTTGATCAATTTATAATTTTTTATGAAAAAATTATATTAAATGGTAATAATA
TTTCAAATTATTTAGGTAATGATAATAGTAATAGTAGTGGTAATAATAGTTCAAATAGTA
GTAAAAATAAAACAATATTTTCGAAATCAATTAATAATTTTAGATATGATATATTAGAAT
ATTTAATTGAAAGAACTGGTTTTATATCAACTACTGCAATATTATCAGATTTAATT----
------
Length of 5' end seq. 236
3' end seq. ID SSL401Z
3' end seq. 
>SSL401Z.Seq
----------ATAGTGTATTATATTATATCATTTCGAAAGGATTTTATAATATTTTAAAT
TTCATATATCAATCAAATATCAATCATTTTCAATCTTTTGAATTTAAAAACATTGAATTA
GTATATAATGGAGTTATCAATAATAAAAACTCTGATAAAATTATTAAATTATTAAATAAT
ATAAAAAATCATTTTTATCCTCCATCTCCTCCAACTAATGATATAATTTTTAAAAAACAA
AAATATAATAACCTTTTTTAATTAACTCTTTATAAAAAAAAAAAAAAAAAAAAACAATAA
TAAAATTAATATCAAAATATTAAATTATTTATATA
Length of 3' end seq. 325
Connected seq. ID SSL401P
Connected seq. 
>SSL401P.Seq
GTGGTACACTTGATCAATTTATAATTTTTTATGAAAAAATTATATTAAATGGTAATAATA
TTTCAAATTATTTAGGTAATGATAATAGTAATAGTAGTGGTAATAATAGTTCAAATAGTA
GTAAAAATAAAACAATATTTTCGAAATCAATTAATAATTTTAGATATGATATATTAGAAT
ATTTAATTGAAAGAACTGGTTTTATATCAACTACTGCAATATTATCAGATTTAATT----
------ATAGTGTATTATATTATATCATTTCGAAAGGATTTTATAATATTTTAAATTTCA
TATATCAATCAAATATCAATCATTTTCAATCTTTTGAATTTAAAAACATTGAATTAGTAT
ATAATGGAGTTATCAATAATAAAAACTCTGATAAAATTATTAAATTATTAAATAATATAA
AAAATCATTTTTATCCTCCATCTCCTCCAACTAATGATATAATTTTTAAAAAACAAAAAT
ATAATAACCTTTTTTAATTAACTCTTTATAAAAAAAAAAAAAAAAAAAAACAATAATAAA
ATTAATATCAAAATATTAAATTATTTATATA
Length of connected seq. 561
Full length Seq ID -
Full length Seq. -
Length of full length seq. -