>SSL385 (SSL385Q) /CSM/SS/SSL3-D/SSL385Q.Seq.d/
XXXXXXXXXXCTCTGTTATTCATGAAATTAAAATTGTTTCATTTGAAGAAAGGGGAGACA
CTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGTCATGTAATTAACAAAAACC
AAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGAGAATTATATGTTTAGAAAA
AAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATATAAAATTAAATAAAAATAT
CATTTGAATTTATTTTTAAATGATTTAATAATTAAATAAA

---SVIHEIKIVSFEERGDTIVYQMVMNFEIGGHVINKNQEVHQTWEYDKVIRELYV*kk
vkkkkkvkinnfi*n*ikisfefifk*fnn*i

Frame A:
---SVIHEIKIVSFEERGDTIVYQMVMNFEIGGHVINKNQEVHQTWEYDKVIRELYV*kk
vkkkkkvkinnfi*n*ikisfefifk*fnn*i


Frame B:
---llfmklklfhlkkgetllfikw**ilklvvm*ltktkrfiklgnmikllenymfrkk
*krkkk*kliilykik*kyhlnlflndliik*


Frame C:
---cys*n*ncfi*rkgrhyclsngnef*nwwscn*qkprgssnlgi**sy*riicleks
kkekkskn**fyiklnknii*iyf*mi**lnk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM777 (SSM777Q) /CSM/SS/SSM7-D/SSM777Q.Seq.d/                        329   1e-89
SSM329 (SSM329Q) /CSM/SS/SSM3-B/SSM329Q.Seq.d/                        329   1e-89
SSL385 (SSL385Q) /CSM/SS/SSL3-D/SSL385Q.Seq.d/                        329   1e-89
SSK894 (SSK894Q) /CSM/SS/SSK8-D/SSK894Q.Seq.d/                        329   1e-89
SSK483 (SSK483Q) /CSM/SS/SSK4-D/SSK483Q.Seq.d/                        329   1e-89
SSJ707 (SSJ707Q) /CSM/SS/SSJ7-A/SSJ707Q.Seq.d/                        329   1e-89
SSJ575 (SSJ575Q) /CSM/SS/SSJ5-D/SSJ575Q.Seq.d/                        329   1e-89
SSJ109 (SSJ109Q) /CSM/SS/SSJ1-A/SSJ109Q.Seq.d/                        329   1e-89
SSI104 (SSI104Q) /CSM/SS/SSI1-A/SSI104Q.Seq.d/                        329   1e-89
SSH546 (SSH546Q) /CSM/SS/SSH5-B/SSH546Q.Seq.d/                        329   1e-89

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U97194|U97194.3 Caenorhabditis elegans cosmid C37A2, complete sequence.    38  0.049  3
BZ347525|BZ347525.1 hm84h07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hm84h07 5', DNA sequence.    42  0.31  2
BZ343516|BZ343516.1 ho57b09.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ho57b09 5', DNA sequence.    42  0.31  2
BZ692374|BZ692374.1 SP__Ba0020C03.f SP__Ba Sorghum propinquum genomic clone SP__Ba0020C03 5', genomic survey sequence.    42  0.33  2
BZ366117|BZ366117.1 ic94g05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ic94g05 5', DNA sequence.    42  0.34  2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    42  0.86  5
AC114187|AC114187.4 Rattus norvegicus clone CH230-229P12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44  0.88  1
AC020189|AC020189.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  0.88  1
BZ626058|BZ626058.1 ih42h02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ih42h02 5', DNA sequence.    38  2.9  2
BZ780852|BZ780852.1 ii21a07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ii21a07, DNA sequence.    38  3.0  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 258,251,593

 psg: 0.57  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSL385 is cyt

>SSL385Z.Seq
----------CTCTGTTATTCATGAAATTAAAATTGTTTCATTTGAAGAAAGGGGAGACA
CTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGTCATGTAATTAACAAAAACC
AAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGAGAATTATATGTTTAGAAAA
AAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATATAAAATTAAATAAAAATAT
CATTTGAATTTATTTTTAAATGATTTAATAATTAAATAAA