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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL375
Library SS
(Link to library)
Clone ID SSL375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15438-1
Original site URL
Representative seq. ID SSL375Z
(Link to Original site)
Representative DNA sequence 
>SSL375 (SSL375Q) /CSM/SS/SSL3-D/SSL375Q.Seq.d/
XXXXXXXXXXTTTTGATGAAGAAGATGATGAATTAAGTGCTGAAGAAAGGGAAAAAGCTA
AATGCAGAAGAGCCAAAAGCTCATGCAGATACTTCTTTAGTGCTGTTGATAAGGATAAGA
ACGATAAATTATCCTATCTAGAAATTCATGAATATCTTAAAAAACATCCAGAATTTGATC
TTGGTCCATCCCAATAAAAAAATGGTTTTCTTTCTTTAAAAGGTTTTTAAAGTTTTTTTT
TTTTACATTCAATTAAAAATTTATACCAAACTTTAAAAAAAAAAAAG
sequence update 1998. 4.25
Translated Amino Acid sequence 
---FDEEDDELSAEEREKAKCRRAKSSCRYFFSAVDKDKNDKLSYLEIHEYLKKHPEFDL
GPSQ*kngflslkgf*sffflhsiknlyqtlkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---FDEEDDELSAEEREKAKCRRAKSSCRYFFSAVDKDKNDKLSYLEIHEYLKKHPEFDL
GPSQ*kngflslkgf*sffflhsiknlyqtlkkkk


Frame B:
---lmkkmmn*vlkkgkklnaeepkahadtslvllirirtinypi*kfmnilkniqnlil
vhpnkkmvffl*kvfkvfffyiqlkiytkl*kkk


Frame C:
---**rr**ikc*rkgks*mqksqklmqill*cc**g*er*iilsrns*is*ktsri*sw
sipikkwfsffkrflkfffftfn*kfipnfkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL375 (SSL375Q) /CSM/SS/SSL3-D/SSL375Q.Seq.d/                        410   e-114
SSG510 (SSG510Q) /CSM/SS/SSG5-A/SSG510Q.Seq.d/                        410   e-114
SSG482 (SSG482Q) /CSM/SS/SSG4-D/SSG482Q.Seq.d/                        410   e-114
SSF254 (SSF254Q) /CSM/SS/SSF2-C/SSF254Q.Seq.d/                        410   e-114
SSC840 (SSC840Q) /CSM/SS/SSC8-B/SSC840Q.Seq.d/                        410   e-114
SSC196 (SSC196Q) /CSM/SS/SSC1-D/SSC196Q.Seq.d/                        410   e-114
SSC192 (SSC192Q) /CSM/SS/SSC1-D/SSC192Q.Seq.d/                        410   e-114
SSM295 (SSM295Q) /CSM/SS/SSM2-D/SSM295Q.Seq.d/                        398   e-110
SSE301 (SSE301Q) /CSM/SS/SSE3-A/SSE301Q.Seq.d/                        398   e-110
SSA637 (SSA637Q) /CSM/SS/SSA6-B/SSA637Q.Seq.d/                        398   e-110
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB070447|AB070447.1 Dictyostelium discoideum cbpE mRNA for calcium binding protein CBP5, complete cds, clone:SSA637.   351  e-113  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   281  e-105  4
AC109578|AC109578.5 Rattus norvegicus clone CH230-231B18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.23  1
CD758018|CD758018.1 AGENCOURT_14620403 NCI_CGAP_ZEmb3 Danio rerio cDNA clone IMAGE:6969544 5', mRNA sequence.    46  0.23  1
AC126345|AC126345.11 Homo sapiens chromosome 11, clone RP11-100E23, complete sequence.    36  0.53  4
AC104862|AC104862.4 Mus musculus clone RP23-124I9, WORKING DRAFT SEQUENCE, 10 ordered pieces.    36  0.72  5
AC141615|AC141615.1 Homo sapiens chromosome 16 clone RP11-93D18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.85  4
AQ314113|AQ314113.1 RPCI11-103P7.TV RPCI-11 Homo sapiens genomic clone RPCI-11-103P7, DNA sequence.    44  0.90  1
BF294521|BF294521.1 006PbA03 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44  0.90  1
BH023521|BH023521.1 GH_MBb0004N03r Gossypium hirsutum L. Gossypium hirsutum genomic clone GH_MBb0004N03r, DNA sequence.    40  1.1  2
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...   102   4e-21
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...   100   2e-20
FJ362363_2(FJ362363|pid:none) Caenorhabditis brenneri contig JD1...    34   1.8
protein update 2009. 2. 3
PSORT 

 psg: 0.75  gvh: 0.11  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSL375 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL375Z
3' end seq. 
>SSL375Z.Seq
----------TTTTGATGAAGAAGATGATGAATTAAGTGCTGAAGAAAGGGAAAAAGCTA
AATGCAGAAGAGCCAAAAGCTCATGCAGATACTTCTTTAGTGCTGTTGATAAGGATAAGA
ACGATAAATTATCCTATCTAGAAATTCATGAATATCTTAAAAAACATCCAGAATTTGATC
TTGGTCCATCCCAATAAAAAAATGGTTTTCTTTCTTTAAAAGGTTTTTAAAGTTTTTTTT
TTTTACATTCAATTAAAAATTTATACCAAACTTTAAAAAAAAAAAAG
Length of 3' end seq. 277
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -