SSL363
Library SS
(Link to library)
Clone ID SSL363
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16131-1
Original site URL
Representative seq. ID SSL363E
(Link to Original site)
Representative DNA sequence
>SSL363 (SSL363Q) /CSM/SS/SSL3-C/SSL363Q.Seq.d/
GCTTTGGTAAGTGAAAATAAAGTTTTGGTTCATCCTTCTTCTGCAGATACCATTAGCACA
AGTAGTGCAAAAGAAGATCACGTTTCAATGGGTGGTTGGTCTGCTCGTAAATGTTTAAAT
GTTGATGAAAATGTTGAAAATGTTTTAGCAATCGAATTATTAGCAGCTTGTCAAGGTTTG
GATTTTAGAAGACCTTTAAAAACCACTGAACCATTAGAAGCAGTCTATCAATTAGTACGT
TCAAAAGTTACTTTTATGGATAAAGATAGATTCATACAACCAGATATAGAAGAAGTTTAT
AAATTAATTAGATCTGGTCAAGTTTTAAATGTAGTAAACTCTATTTTAAATAAAAAATAA
AAAATAAAAAAAATTTTAATTAAATAATTTATAAATTATTTAATAAAAAAAAAAAAAAAA
T
sequence update 1999. 6.25
Translated Amino Acid sequence
ALVSENKVLVHPSSADTISTSSAKEDHVSMGGWSARKCLNVDENVENVLAIELLAACQGL
DFRRPLKTTEPLEAVYQLVRSKVTFMDKDRFIQPDIEEVYKLIRSGQVLNVVNSILNKK*
kikkilik*finylikkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ALVSENKVLVHPSSADTISTSSAKEDHVSMGGWSARKCLNVDENVENVLAIELLAACQGL
DFRRPLKTTEPLEAVYQLVRSKVTFMDKDRFIQPDIEEVYKLIRSGQVLNVVNSILNKK*
kikkilik*finylikkkkk


Frame B:
lw*vkikfwfilllqiplaqvvqkkitfqwvvgllvnv*mlmkmlkmf*qsny*qlvkvw
iledl*kplnh*kqsin*yvqklllwikidsynqi*kkfin*ldlvkf*m**tlf*iknk
k*kkf*lnnl*ii**kkkkn


Frame C:
fgk*k*sfgssffcryh*hk*ckrrsrfngwlvcs*mfkc**kc*kcfsnriisslsrfg
f*ktfknh*tirsslsistfksyfyg*r*ihttryrrsl*in*iwssfkcsklyfk*kik
nkknfn*iiyklfnkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL363 (SSL363Q) /CSM/SS/SSL3-C/SSL363Q.Seq.d/ 688 0.0
SSI722 (SSI722Q) /CSM/SS/SSI7-A/SSI722Q.Seq.d/ 680 0.0
FCL-AD02 (FCL-AD02Q) /CSM/FCL/FCL-AD/FCL-AD02Q.Seq.d/ 664 0.0
SSI358 (SSI358Q) /CSM/SS/SSI3-C/SSI358Q.Seq.d/ 587 e-167
AFO870 (AFO870Q) /CSM/AF/AFO8-C/AFO870Q.Seq.d/ 539 e-152
VHN766 (VHN766Q) /CSM/VH/VHN7-C/VHN766Q.Seq.d/ 36 0.41
VHB367 (VHB367Q) /CSM/VH/VHB3-C/VHB367Q.Seq.d/ 36 0.41
VHB222 (VHB222Q) /CSM/VH/VHB2-A/VHB222Q.Seq.d/ 36 0.41
SSK575 (SSK575Q) /CSM/SS/SSK5-D/SSK575Q.Seq.d/ 36 0.41
SSJ381 (SSJ381Q) /CSM/SS/SSJ3-D/SSJ381Q.Seq.d/ 36 0.41

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD230006|CD230006.1 SS1_40_D06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_40_D06_A012 3', mRNA sequence. 38 0.004 2
CC763815|CC763815.1 CH240_41M15.TV CHORI-240 Bos taurus genomic clone CH240_41M15, genomic survey sequence. 46 0.35 1
AV246180|AV246180.1 Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832405P04, 3' end partial sequence. 40 0.99 2
BW104163|BW104163.1 Ciona intestinalis cDNA, clone:rcilv087k02, 3' end, single read. 44 1.4 1
BI742620|BI742620.1 kx33c10.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HUTH_CAEEL Q20502 PROBABLE HISTIDINE AMMONIA-LYASE ;, mRNA sequence. 44 1.4 1
BM166278|BM166278.1 EST568801 PyBS Plasmodium yoelii yoelii cDNA clone PYCNF44 5' end, mRNA sequence. 44 1.4 1
AV865317|AV865317.1 Ciona intestinalis cDNA, clone:rcieg42b09, 3' end, single read. 44 1.4 1
AE007781|AE007781.1 Clostridium acetobutylicum ATCC824 section 269 of 356 of the complete genome. 44 1.4 1
CC251353|CC251353.1 CH261-127L22_Sp6.1 CH261 Gallus gallus genomic clone CH261-127L22, DNA sequence. 44 1.4 1
BI322826|BI322826.1 kx16f11.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HUTH_CAEEL Q20502 PROBABLE HISTIDINE AMMONIA-LYASE ;, mRNA sequence. 44 1.4 1
dna update 2003. 9.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC077229_1(BC077229|pid:none) Xenopus laevis histidine ammonia-l... 150 2e-35
BC115354_1(BC115354|pid:none) Danio rerio hypothetical protein L... 145 3e-34
BC080414_1(BC080414|pid:none) Xenopus laevis hypothetical protei... 144 7e-34
AK297004_1(AK297004|pid:none) Homo sapiens cDNA FLJ57123 complet... 143 2e-33
AB042217_1(AB042217|pid:none) Homo sapiens HAL gene for histidas... 143 2e-33
(A7YWP4) RecName: Full=Histidine ammonia-lyase; Short=H... 143 2e-33
AK303544_1(AK303544|pid:none) Homo sapiens cDNA FLJ61019 complet... 142 4e-33
(P35492) RecName: Full=Histidine ammonia-lyase; Short=H... 141 6e-33
(Q20502) RecName: Full=Probable histidine ammonia-lyase; ... 128 7e-29
(B6IWC6) RecName: Full=Histidine ammonia-lyase; Short=H... 125 5e-28
protein update 2009. 7. 9
PSORT

psg: 0.83 gvh: 0.66 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for SSL363 is cyt

5' end seq. ID SSL363F
5' end seq.
>SSL363F.Seq
GCTTTGGTAAGTGAAAATAAAGTTTTGGTTCATCCTTCTTCTGCAGATACCATTAGCACA
AGTAGTGCAAAAGAAGATCACGTTTCAATGGGTGGTTGGTCTGCTCGTAAATGTTTAAAT
GTTGATGAAAATGTTGAAAATGTTTTAGCAATCGAATTATTAGCAGCTTGTCAAGGTTTG
GATTTTAGAAGACCTTTAAAAACCACTGAACCATTAGAAGCAGTCTATCAATTAGTACGT
TCAAAAGTTACTTTTATGGATAAAGATAGATTCATACAACCAGATATAGAAGAAGTTTAT
AAATTAATTAGATCTGGTCAAGTTTTAAATGTAGTA----------
Length of 5' end seq. 336
3' end seq. ID SSL363Z
3' end seq.
>SSL363Z.Seq
----------GTCTATCAATTAGTACGTTCAAAAGTTACTTTTATGGATAAAGATAGATT
CATACAACCAGATATAGAAGAAGTTTATAAATTAATTAGATCTGGTCAAGTTTTAAATGT
AGTAAACTCTATTTTAAATAAAAAATAAAAAATAAAAAAAATTTTAATTAAATAATTTAT
AAATTATTTAATAAAAAAAAAAAAAAAAT
Length of 3' end seq. 199
Connected seq. ID SSL363P
Connected seq.
>SSL363P.Seq
GCTTTGGTAAGTGAAAATAAAGTTTTGGTTCATCCTTCTTCTGCAGATACCATTAGCACA
AGTAGTGCAAAAGAAGATCACGTTTCAATGGGTGGTTGGTCTGCTCGTAAATGTTTAAAT
GTTGATGAAAATGTTGAAAATGTTTTAGCAATCGAATTATTAGCAGCTTGTCAAGGTTTG
GATTTTAGAAGACCTTTAAAAACCACTGAACCATTAGAAGCAGTCTATCAATTAGTACGT
TCAAAAGTTACTTTTATGGATAAAGATAGATTCATACAACCAGATATAGAAGAAGTTTAT
AAATTAATTAGATCTGGTCAAGTTTTAAATGTAGTA----------GTCTATCAATTAGT
ACGTTCAAAAGTTACTTTTATGGATAAAGATAGATTCATACAACCAGATATAGAAGAAGT
TTATAAATTAATTAGATCTGGTCAAGTTTTAAATGTAGTAAACTCTATTTTAAATAAAAA
ATAAAAAATAAAAAAAATTTTAATTAAATAATTTATAAATTATTTAATAAAAAAAAAAAA
AAAAT
Length of connected seq. 535
Full length Seq ID SSL363E
Full length Seq.
>SSL363E.Seq
GCTTTGGTAAGTGAAAATAAAGTTTTGGTTCATCCTTCTTCTGCAGATACCATTAGCACA
AGTAGTGCAAAAGAAGATCACGTTTCAATGGGTGGTTGGTCTGCTCGTAAATGTTTAAAT
GTTGATGAAAATGTTGAAAATGTTTTAGCAATCGAATTATTAGCAGCTTGTCAAGGTTTG
GATTTTAGAAGACCTTTAAAAACCACTGAACCATTAGAAGCAGTCTATCAATTAGTACGT
TCAAAAGTTACTTTTATGGATAAAGATAGATTCATACAACCAGATATAGAAGAAGTTTAT
AAATTAATTAGATCTGGTCAAGTTTTAAATGTAGTAAACTCTATTTTAAATAAAAAATAA
AAAATAAAAAAAATTTTAATTAAATAATTTATAAATTATTTAATAAAAAAAAAAAAAAAA
T
Length of full length seq. 421