SSL359
Library SS
(Link to library)
Clone ID SSL359
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSL359P
(Link to Original site)
Representative DNA sequence
>SSL359 (SSL359Q) /CSM/SS/SSL3-C/SSL359Q.Seq.d/
ATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTTTACTG
TTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATTTCAAG
ATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTTAAAA
GCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGATACTA
AATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTATTXXX
XXXXXXXACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCC
GTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAG
GATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTA
GTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence
i*NIKKMKVILLFVLAVFTVFVSSRGIPLEEQSQFLEFQDKFNKKYSHEEYLERFEIFKS
NLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYY---

---LDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST
SII*iytkylv*kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iyetlkk*klyyylf*lfllflfqveefh*knkvnslnfkinsiknihmkniwkdlkflk
ai*eklkn*i**plitklilnlv*tslqifpvtnlkiii---

---t*swyfncwllc*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymwciklcfn
*ynlnlyqifslekkkk

Frame B:
ymkh*knesyiiicfscfycfcfk*rnsirrtksip*isr*iq*kift*rifgki*nf*k
qfrkn*riksnsh*sqs*y*iwckqvcrsfq*ri*kll---

---LDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST
SII*iytkylv*kkkkk

Frame C:
i*NIKKMKVILLFVLAVFTVFVSSRGIPLEEQSQFLEFQDKFNKKYSHEEYLERFEIFKS
NLGKIEELNLIAINHKADTKFGVNKFADLSSDEFKNYY---

---limvf*llvtllkiqfsvkichigl*rilgvqigenkdtfi*eeerihvvyqtlfql
v*fkfipni*frkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSL359 (SSL359Q) /CSM/SS/SSL3-C/SSL359Q.Seq.d/ 825 0.0
VFF582 (VFF582Q) /CSM/VF/VFF5-D/VFF582Q.Seq.d/ 452 e-126
VFC443 (VFC443Q) /CSM/VF/VFC4-B/VFC443Q.Seq.d/ 452 e-126
VFA268 (VFA268Q) /CSM/VF/VFA2-C/VFA268Q.Seq.d/ 452 e-126
SSE157 (SSE157Q) /CSM/SS/SSE1-C/SSE157Q.Seq.d/ 452 e-126
SSC354 (SSC354Q) /CSM/SS/SSC3-C/SSC354Q.Seq.d/ 452 e-126
SLK593 (SLK593Q) /CSM/SL/SLK5-D/SLK593Q.Seq.d/ 452 e-126
SFJ881 (SFJ881Q) /CSM/SF/SFJ8-D/SFJ881Q.Seq.d/ 452 e-126
SFF369 (SFF369Q) /CSM/SF/SFF3-C/SFF369Q.Seq.d/ 452 e-126
SFE852 (SFE852Q) /CSM/SF/SFE8-C/SFE852Q.Seq.d/ 452 e-126

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 436 0.0 3
AJ510164|AJ510164.1 Cloning vector pDXA-3strep. 216 2e-54 2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H. 216 2e-54 2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY. 216 2e-54 2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG. 216 2e-54 2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C. 216 2e-54 2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC. 216 2e-54 2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence. 216 2e-54 2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 216 3e-54 2
AJ510166|AJ510166.1 Cloning vector pDXA-GST. 216 3e-54 2
dna update 2003. 8.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 157 2e-37
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)... 87 2e-16
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183... 84 2e-15
(Q9VN93) RecName: Full=Putative cysteine proteinase CG12163; ... 83 5e-15
AE014297_190(AE014297|pid:none) Drosophila melanogaster chromoso... 83 5e-15
FJ907947_1(FJ907947|pid:none) Drosophila silvestris clone sv3E-Z... 82 8e-15
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot... 80 4e-14
AF197480_1(AF197480|pid:none) Mus musculus strain C57BL/6 cathep... 79 7e-14
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20... 79 9e-14
BC099780_1(BC099780|pid:none) Rattus norvegicus cathepsin F, mRN... 78 1e-13
protein update 2009. 6.15
PSORT

psg: 0.99 gvh: 0.64 alm: 0.20 top: 0.13 tms: 0.07 mit: 0.30 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for SSL359 is end

5' end seq. ID SSL359F
5' end seq.
>SSL359F.Seq
ATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTTTACTG
TTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATTTCAAG
ATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTTAAAA
GCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGATACTA
AATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTATT---
-------
Length of 5' end seq. 297
3' end seq. ID SSL359Z
3' end seq.
>SSL359Z.Seq
----------ACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTT
TCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAAC
AAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAA
CTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAA
Length of 3' end seq. 223
Connected seq. ID SSL359P
Connected seq.
>SSL359P.Seq
ATATATGAAACATTAAAAAAATGAAAGTTATATTATTATTTGTTTTAGCTGTTTTTACTG
TTTTTGTTTCAAGTAGAGGAATTCCATTAGAAGAACAAAGTCAATTCCTTGAATTTCAAG
ATAAATTCAATAAAAAATATTCACATGAAGAATATTTGGAAAGATTTGAAATTTTTAAAA
GCAATTTAGGAAAAATTGAAGAATTAAATCTAATAGCCATTAATCACAAAGCTGATACTA
AATTTGGTGTAAACAAGTTTGCAGATCTTTCCAGTGACGAATTTAAAAATTATTATT---
-------ACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCC
GTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAG
GATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTA
GTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAA
Length of connected seq. 520
Full length Seq ID -
Full length Seq. -
Length of full length seq. -