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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL338
Library SS
(Link to library)
Clone ID SSL338
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16182-1
Original site URL
Representative seq. ID SSL338P
(Link to Original site)
Representative DNA sequence 
>SSL338 (SSL338Q) /CSM/SS/SSL3-B/SSL338Q.Seq.d/
TGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGACGATAATAATATTATT
ATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAGATAATGATCCAGAATT
ATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACAAACACCAGTACCATGGGGAACATT
CAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTT
TGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTAC
AACTGGXXXXXXXXXXTTTTATCAATCATTGGTTTAAAGAAATATATTTACGTTCAAGGT
GAATATTATTTATTNGAATTAAATTATCCATTTATGAATGCAAAATATGATTATATCACA
TTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATGGCAATTTTATTCATCTCAAT
TAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGTTATAAATAAAAACTAAAAAC
AAAAATAATAAAAAAAAAATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTG
sequence update 1999. 1.17
Translated Amino Acid sequence 
VHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPVPWGTF
NDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTT---

---LSIIGLKKYIYVQGEYYLXELNYPFMNAKYDYITLPGCPANGIDYENGNFIHLN*ii
lkldyfklnwl*iktknknnkkkisfff*yfsncf
Translated Amino Acid sequence (All Frames) 
Frame A:
ctykn*nkrkknekddnniiiciiicnicfitntr**srimstknskrglstntstmgni
q*q*rnrsllyastsfrssfwkflw*vgwisfsnwfl*pynw---

---fyqslv*rniftfkvniiyxn*iihl*mqnmiishyqvvqqmvsimkmailfisirl
f*n*iiln*igyk*klktkiikkkylfffnifqtvs

Frame B:
VHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPQTPVPWGTF
NDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTT---

---finhwfkeiylrsr*ilfixiklsiyecki*lyhitrlsskwyrl*kwqfyssqldy
fkirlf*iklvinkn*kqk**kknifffliffklfl

Frame C:
yi*klk*kkkk*kgr**yyylyhyl*hlfyhkyqimiqnyvnkefkerivhkhqyhgehs
mtmtkskstickhqfskqfleislvswvdiiqqlvsmtlql---

---LSIIGLKKYIYVQGEYYLXELNYPFMNAKYDYITLPGCPANGIDYENGNFIHLN*ii
lkldyfklnwl*iktknknnkkkisfff*yfsncf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL338 (SSL338Q) /CSM/SS/SSL3-B/SSL338Q.Seq.d/                        811   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        525   e-148
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        525   e-148
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        525   e-148
VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                        525   e-148
VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/                        525   e-148
SSB231 (SSB231Q) /CSM/SS/SSB2-B/SSB231Q.Seq.d/                        525   e-148
SSA660 (SSA660Q) /CSM/SS/SSA6-C/SSA660Q.Seq.d/                        525   e-148
SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                        517   e-146
VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/                        498   e-140
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   525  0.0  4
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                 52  0.017  8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44  0.047  7
AC126501|AC126501.4 Rattus norvegicus clone CH230-206K3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.12  1
AZ179765|AZ179765.1 SP_0166_B1_A11_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=166 Col=21 Row=B, DNA sequence.    48  0.12  1
BH334420|BH334420.1 CH230-110K10.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-110K10, DNA sequence.    48  0.12  1
BH318036|BH318036.1 CH230-196J14.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-196J14, DNA sequence.    48  0.12  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           36  0.25  8
BX470175|BX470175.6 Zebrafish DNA sequence from clone DKEY-228K17 in linkage group 18.    44  0.40  4
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    44  0.42  4
dna update 2003. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   158   9e-38
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   158   9e-38
(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    46   9e-04
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    44   0.003
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    44   0.003
(Q54WC3) RecName: Full=Cln5-like protein 2; Flags: Precursor;          44   0.003
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    44   0.003
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    44   0.003
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    44   0.003
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    44   0.003
protein update 2009. 6.15
PSORT 

 psg: 0.71  gvh: 0.86  alm: 0.17  top: -0.17  tms: 0.07  mit: 0.25  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane

>> prediction for SSL338 is cyt
5' end seq. ID SSL338F
5' end seq. 
>SSL338F.Seq
TGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGACGATAATAATATTATT
ATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAGATAATGATCCAGAATT
ATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACAAACACCAGTACCATGGGGAACATT
CAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTT
TGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTAC
AACTGG----------
Length of 5' end seq. 306
3' end seq. ID SSL338Z
3' end seq. 
>SSL338Z.Seq
----------TTTTATCAATCATTGGTTTAAAGAAATATATTTACGTTCAAGGTGAATAT
TATTTATTNGAATTAAATTATCCATTTATGAATGCAAAATATGATTATATCACATTACCA
GGTTGTCCAGCAAATGGTATCGATTATGAAAATGGCAATTTTATTCATCTCAATTAGATT
ATTTTAAAATTAGATTATTTTAAATTAAATTGGTTATAAATAAAAACTAAAAACAAAAAT
AATAAAAAAAAAATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTG
Length of 3' end seq. 280
Connected seq. ID SSL338P
Connected seq. 
>SSL338P.Seq
TGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGACGATAATAATATTATT
ATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAGATAATGATCCAGAATT
ATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACAAACACCAGTACCATGGGGAACATT
CAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAGTTTTCGAAGCAGTTTT
TGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTGGTTTCTATGACCTTAC
AACTGG----------TTTTATCAATCATTGGTTTAAAGAAATATATTTACGTTCAAGGT
GAATATTATTTATTNGAATTAAATTATCCATTTATGAATGCAAAATATGATTATATCACA
TTACCAGGTTGTCCAGCAAATGGTATCGATTATGAAAATGGCAATTTTATTCATCTCAAT
TAGATTATTTTAAAATTAGATTATTTTAAATTAAATTGGTTATAAATAAAAACTAAAAAC
AAAAATAATAAAAAAAAAATATCTTTTTTTTTTTAATATTTTTCAAACTGTTTCTG
Length of connected seq. 586
Full length Seq ID -
Full length Seq. -
Length of full length seq. -