>SSL275 (SSL275Q) /CSM/SS/SSL2-D/SSL275Q.Seq.d/
GAAAGAAATAGAAGTAGAACACGTTCAAGATCTGGTTCAAGAAGAAGAAAGTCTATCGAT
TTTAGCTTATTAGCTGAAAGAAGAGTTTATGTAGGTCGTATCTCAAATAAAACTACAAGA
GAATCTCTAGAAGATTCTTTCCTTAAATTTGGTAAAGTTCTATCGTGTGATGTTAAAAAT
GGTTATGCTTTTGTTGAATTTGATAATGAAAAGAGTGCAAGAGATGCCATTGAAGAAATG
CACGATTCAATTGTTGACGGTGAAAAGATTCTTGTAGAGAAATCACACAGTGGTAAXXXX
XXXXXX

ERNRSRTRSRSGSRRRKSIDFSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKN
GYAFVEFDNEKSARDAIEEMHDSIVDGEKILVEKSHSG---

Frame A:
ERNRSRTRSRSGSRRRKSIDFSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKN
GYAFVEFDNEKSARDAIEEMHDSIVDGEKILVEKSHSG---


Frame B:
keievehvqdlvqeeeslsilay*lkeefm*vvsqiklqenl*kilslnlvkfyrvmlkm
vmlllnlimkrvqemplkkctiqlltvkrfl*rnhtvv---


Frame C:
kk*k*ntfkiwfkkkkvyrf*lis*kkslcrsylk*nykrisrrffp*iw*ssiv*c*kw
lcfc*i***keckrch*rnarfnc*r*kdscreitqw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE317 (VFE317Q) /CSM/VF/VFE3-A/VFE317Q.Seq.d/                        587   e-167
SSL275 (SSL275Q) /CSM/SS/SSL2-D/SSL275Q.Seq.d/                        587   e-167
FC-BG08 (FC-BG08Q) /CSM/FC/FC-BG/FC-BG08Q.Seq.d/                      563   e-160
VFF885 (VFF885Q) /CSM/VF/VFF8-D/VFF885Q.Seq.d/                        527   e-149
VFB441 (VFB441Q) /CSM/VF/VFB4-B/VFB441Q.Seq.d/                        301   3e-81
SSM334 (SSM334Q) /CSM/SS/SSM3-B/SSM334Q.Seq.d/                        254   7e-67
SSJ105 (SSJ105Q) /CSM/SS/SSJ1-A/SSJ105Q.Seq.d/                        123   2e-27
VSF858 (VSF858Q) /CSM/VS/VSF8-C/VSF858Q.Seq.d/                         78   9e-14
VFG548 (VFG548Q) /CSM/VF/VFG5-B/VFG548Q.Seq.d/                         58   8e-08
VSJ524 (VSJ524Q) /CSM/VS/VSJ5-A/VSJ524Q.Seq.d/                         40   0.019

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CD478972|CD478972.1 eca01-60ms2-a01 Eca01 Eschscholzia californica cDNA clone eca01-60ms2-a01 5', mRNA sequence.    48  0.062  1
BG384374|BG384374.1 303440 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence.    36  0.13  3
AL021768|AL021768.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA  project).    46  0.24  1
AL161551|AL161551.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51.    46  0.24  1
BQ640875|BQ640875.1 TVEST012.F04 Tv30236_PT cDNA Library Trichomonas vaginalis cDNA 5' similar to SYNAPTOBREVIN-LIKE PROTEIN (SYNAPTOBREVIN LIKE 1), mRNA sequence.    46  0.24  1
AC122604|AC122604.4 Rattus norvegicus clone CH230-237O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.42  2
AC133651|AC133651.2 Mus musculus chromosome UNK clone RP24-239C15, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38  0.66  5
AC131619|AC131619.3 Rattus norvegicus clone CH230-106E8, *** SEQUENCING IN PROGRESS ***, 71 unordered pieces.    46  0.72  3
CD647958|CD647958.1 AUF_101_H02_T7 Crassostrea virginica Gill Crassostrea virginica cDNA 5' similar to hnRNP protein, mRNA sequence.    44  0.96  1
BZ390757|BZ390757.1 EINBB17TR EI_10_12_KB Entamoeba invadens genomic clone EINBB17, DNA sequence.    44  0.96  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN320366_1(FN320366|pid:none) Schistosoma japonicum isolate Anhu...    67   2e-10
FN320364_1(FN320364|pid:none) Schistosoma japonicum isolate Anhu...    67   2e-10
FN357373_15(FN357373|pid:none) Schistosoma mansoni genome sequen...    67   2e-10
FN320365_1(FN320365|pid:none) Schistosoma japonicum isolate Anhu...    67   2e-10
FN320367_1(FN320367|pid:none) Schistosoma japonicum isolate Anhu...    67   2e-10
FN357373_14(FN357373|pid:none) Schistosoma mansoni genome sequen...    67   2e-10
BT074492_1(BT074492|pid:none) Osmerus mordax clone omor-eva-520-...    66   3e-10
(Q8VE97) RecName: Full=Splicing factor, arginine/serine-rich 4; ...    65   6e-10
A48133(A48133) pre-mRNA splicing SRp75 - human  &L14076_1(L14076...    65   6e-10
AK291509_1(AK291509|pid:none) Homo sapiens cDNA FLJ76859 complet...    65   6e-10

 psg: 0.31  gvh: 0.40  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.55  mip: 0.04
 nuc: 0.16  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic

>> prediction for SSL275 is nuc

>SSL275F.Seq
GAAAGAAATAGAAGTAGAACACGTTCAAGATCTGGTTCAAGAAGAAGAAAGTCTATCGAT
TTTAGCTTATTAGCTGAAAGAAGAGTTTATGTAGGTCGTATCTCAAATAAAACTACAAGA
GAATCTCTAGAAGATTCTTTCCTTAAATTTGGTAAAGTTCTATCGTGTGATGTTAAAAAT
GGTTATGCTTTTGTTGAATTTGATAATGAAAAGAGTGCAAGAGATGCCATTGAAGAAATG
CACGATTCAATTGTTGACGGTGAAAAGATTCTTGTAGAGAAATCACACAGTGGTAA----
------