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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL271
Library SS
(Link to library)
Clone ID SSL271
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16229-1
Original site URL
Representative seq. ID SSL271Z
(Link to Original site)
Representative DNA sequence 
>SSL271 (SSL271Q) /CSM/SS/SSL2-C/SSL271Q.Seq.d/
XXXXXXXXXXCCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGT
ACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAA
ATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTT
GACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCT
GCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATCAAAAAAGA
AAAAAAATAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAATGACTAACCGCAAA
TGAAAATTGGATATTTTTTAATGTGA
sequence update 1998. 4.22
Translated Amino Acid sequence 
---NDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILD
SGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinnqkrkkikk*ki*nfrkk*mtnrk*
kldif*c
Translated Amino Acid sequence (All Frames) 
Frame A:
---q*picyeclg*rr*crycsyftfrw*l*ih*kdwt*ngw*gfltw*rqiskicydp*
lwccqtscs*rrw*i*ciic*snlktiiniksiyk*skkkknkkiknikf*kkvnd*pqm
kigyflm*


Frame B:
---NDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILD
SGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsinnqkrkkikk*ki*nfrkk*mtnrk*
kldif*c


Frame C:
---mthll*vlgvktlmqvlqllyfqmvtlnslkrldlkwmvrlsylvktdlkdml*slt
lvlsnilqlkkvvnlmyhllkqs*nnykhkinl*iikkekk*knkkykileksk*ltane
nwiffnv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE575 (VSE575Q) /CSM/VS/VSE5-D/VSE575Q.Seq.d/                        559   e-158
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        559   e-158
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/                        559   e-158
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        559   e-158
SSL271 (SSL271Q) /CSM/SS/SSL2-C/SSL271Q.Seq.d/                        559   e-158
SSJ336 (SSJ336Q) /CSM/SS/SSJ3-B/SSJ336Q.Seq.d/                        559   e-158
SSJ321 (SSJ321Q) /CSM/SS/SSJ3-A/SSJ321Q.Seq.d/                        559   e-158
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        559   e-158
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        559   e-158
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        559   e-158
own update 2001. 4.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48  0.079  1
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome.    46  0.31  1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46  0.31  1
AX345182|AX345182.1 Sequence 253 from Patent WO0200928.           46  0.31  1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46  0.31  1
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20.    46  0.35  3
AC124255|AC124255.1 Homo sapiens clone RP11-194J8, LOW-PASS SEQUENCE SAMPLING.    38  2.2  3
AC127135|AC127135.4 Rattus norvegicus clone CH230-89C20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  2.5  5
AX345096|AX345096.1 Sequence 167 from Patent WO0200928.           34  4.7  2
AC097829|AC097829.7 Rattus norvegicus clone CH230-78M23, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  4.9  1
dna update 2003. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...    94   1e-18
CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...    91   1e-17
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...    91   1e-17
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...    90   2e-17
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat...    89   5e-17
CP000158_1040(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...    88   1e-16
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...    87   2e-16
CP000270_3903(CP000270|pid:none) Burkholderia xenovorans LB400 c...    85   7e-16
CP000230_3047(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    85   9e-16
AY050880_1(AY050880|pid:none) Arabidopsis thaliana putative pero...    84   1e-15
protein update 2009. 6.15
PSORT 

 psg: 0.72  gvh: 0.50  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSL271 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL271Z
3' end seq. 
>SSL271Z.Seq
----------CCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGT
ACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAA
ATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTT
GACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCT
GCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATCAAAAAAGA
AAAAAAATAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAATGACTAACCGCAAA
TGAAAATTGGATATTTTTTAATGTGA
Length of 3' end seq. 376
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -